<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24994

Description Uncharacterized protein
SequenceMNFTSEELNYLIYRYLQESGFHHSCYTFGIESHIHRSNINGSSVPPGALISMVQKGMLYYYVDMTLKDENQNNHNNLENISLIDSIGKMSELSSGNLSYGVATNAKNDQQLTPDSQKKLTKDSKREVQYHGIHSYYFLSIFSFNCSCVLENSDQRRSSESDIFAIKWHPNKELIATGSSDGTAKISQPNEVEATVLEHYPNEIDKRQPEASNGNCGISDRYAVTSIVWKPDGSQLLTACADGKGRIWQLDGKLVATLSNHTAPIFVCRWNIDGSLIAMGSADMRVTIWDSSSYEMKQCCDHHKGPVTDIDWQNVSIFATCSTDRSVAVCEVGSEKPIKSYEGHTSEINVVRWDPSSNLLASGSDDCTVKVWNLKQDKCVHDFRGHVRNIYAIKWCPVKRVVSSTGMMLVYLIISASADRTIRIWDVDRGICLYTLNRHQSPVYSLAFNSDGRLLASGSYDTAVNIWSLENGLLVRTVMIDGPVSDIDWHKDNRIVAVSGNGSVRIACLFI
Length510
PositionTail
OrganismTrichoplax adhaerens (Trichoplax reptans)
KingdomMetazoa
LineageEukaryota> Metazoa> Placozoa> Trichoplacidae> Trichoplax.
Aromaticity0.09
Grand average of hydropathy-0.310
Instability index43.49
Isoelectric point6.02
Molecular weight57020.54
Publications
PubMed=18719581

Function

Annotated function 
GO - Cellular Component
histone deacetylase complex	GO:0000118	IBA:GO_Central

GO - Biological Function
transcription corepressor activity	GO:0003714	IBA:GO_Central

GO - Biological Process
histone deacetylation	GO:0016575	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24994
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     375.41|      40|      40|     315|     354|       1
---------------------------------------------------------------------------
  150-  187 (43.01/22.84)	ENSDQRRS..SE...SDIFAIKWHP...........nkELIATGS.SDGTAKI.SQ.
  188-  226 (33.77/16.45)	PNEVEATV..LEHYPNEID..KRQP............eASNGNCGiSDR.YAV.TSI
  232-  258 (23.56/ 9.37)	GSQLLTAC..ADGK.GRI..WQLDG.............KLVATLS............
  259-  290 (35.85/17.89)	............NHTAPIFVCRWNI...........dgSLIAMGS.ADMRVTI.WDS
  291-  331 (54.97/31.13)	SSYEMKQC..CDHHKGPVTDIDWQN............vSIFATCS.TDRSVAV.CEV
  332-  373 (57.74/33.05)	GSEKPIKS..YEGHTSEINVVRWDP...........ssNLLASGS.DDCTVKV.WNL
  374-  426 (50.51/28.04)	KQDKCVHD..FRGHVRNIYAIKWCPvkrvvsstgmmlvYLIISAS.ADRTIRI.WDV
  427-  468 (46.78/25.46)	DRGICLYT..LNRHQSPVYSLAFNS...........dgRLLASGS.YDTAVNI.WSL
  469-  507 (29.22/13.30)	ENGLLVRTvmIDGPVSDID...WHK............dNRIVAVS.GNGSVRIaC..
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24994 with Med16 domain of Kingdom Metazoa
Unable to open file!