<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24992

Description Uncharacterized protein
SequenceMAIFNREQRPLKRPRIGPPDCYPQMTKQKEDDLSSDTLKNGFKNVELVEDEIGSAKPFVTVCNFSRLGSHFKAITEEKQRLNNVYDVNKKKNQVNLKDVYWPVTAKNRTNLNAWLQDLAINKSLKDLSKKIPTLNSNRKEEVFQLLSDNSVPLARSAWFIKLLSTGYNTSSDSKKKRPGGDLSHDWTQSLTKYLKDLLSKLSDHSHGQGKVTLSSDILSAYKQFLYNSQLADWLYQYIRDITASQSLARVLAGICTRYISYLYYHNNNNANEKESKPSSTNSTDNGTTEDWSLLAIYNDCQRHYPRLLLLTCILQIIAIFCPGALVYSIGAWNKGSSNDSLMHHGSPLDYLPGSICQLPGIELLEARVQKQMLAAMKASQSQIQLRSTLVENRWSSEKCKESDISVVVTQVLSVLEIHDKGAYARHNNGISVENLYTNIFPAIIKGSLVKDVLNNDEAIIMHLLEWAVTPFRYGFHRPILVAILLERRQGDLERMNENDAICNHLYYQELLLRFLDYYAILPSDDSELELEQSNASFKLLVALFAELIRRKVFSHDKYIMTLISRGDISTTSNSSRSYANSPDQIVGENDHDGESDECSHLGKKNEEENVIECGSPFSVRRDSEADISDQLKQQLSQQQEELQQLLESNETNSCNGNMDIMEYDNATDDVAFAKPEQENIANKTEGNLSDNDERGRDDDKDKNFNNVTTDTRKTFQHIAYVLHFPLPDIDLRNVDVGSHESRQRFTVLYGVGESRNLALQEVTEMWDEINSCVDYLTTCDSQNSSSNDSNRINYASYLAPTIRKFKTLHIYSQYVLANTCANLIMENVIKENRYPSINKFNFVADLMEIAGDINGFLQFVIRLLSEGDSGAAETRSSLVLTIVAVFRRYYNCLLVSLKQATEAVEGLWRIVKHITNPASCSSADRCALACLADIFTHCSDLKLKNRAELESVLQKVKDSLPCSGLSKSNDPIDWKIFGEEFKEPRRVNSVPVQF
Length994
PositionKinase
OrganismTrichoplax adhaerens (Trichoplax reptans)
KingdomMetazoa
LineageEukaryota> Metazoa> Placozoa> Trichoplacidae> Trichoplax.
Aromaticity0.08
Grand average of hydropathy-0.460
Instability index45.49
Isoelectric point5.67
Molecular weight112755.69
Publications
PubMed=18719581

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24992
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     116.90|      37|      50|     621|     659|       5
---------------------------------------------------------------------------
  621-  659 (55.95/36.50)	RDSEADISDQLKQQLSQQQEELQQllESNETNSCNGNMD
  674-  710 (60.95/34.56)	KPEQENIANKTEGNLSDNDERGRD..DDKDKNFNNVTTD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     196.69|      57|     836|      96|     152|       7
---------------------------------------------------------------------------
   72-  129 (84.91/51.03)	KAITEEKQRLNNVYDVnKKKNQVNLKDVYWPVTAKNRTNLNAWLQDLAINKSLKDLSK
  130-  184 (87.65/52.92)	KIPTLNSNRKEEVFQL.LSDNSVPLARSAWFIKLLS.TGYNT.SSDSKKKRPGGDLSH
  942-  967 (24.13/ 9.33)	................................KLKNRAELESVLQKVKDSLPCSGLSK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24992 with Med12 domain of Kingdom Metazoa
Unable to open file!