<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24965

Description Uncharacterized protein
SequenceMWKYGQNQGNQGPAGAGGGGGNPNMMPMGGFGMQGNMQQMHMSPQHQQQQMGMMGGPGGMQMNPQAGGPGGLMPGMSPQHQMQQQQMMQQQMMGQQQGVTGMGGGVVGMGGPGGMGGAGGSVMPQQQQQPQNMPQQQQPPQQLTPGTPAGVAPGGAGGSNNMLAISQQNPHKEINIVQLSRLGQETVQDIASRFQEVFSALKNIQPTSHRDNNTEKKVQEYFRTIRLLFKRVRIIYEKCNDAGMDYMSAENLIPYRDEPEPRIEPSQCDEYRKVVQENHELIETVKLKNRQLREIIDRTRIIIWEINTMLAMRRS
Length315
PositionHead
OrganismDrosophila ananassae (Fruit fly)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Ephydroidea> Drosophilidae> Drosophila> Sophophora.
Aromaticity0.04
Grand average of hydropathy-0.788
Instability index65.94
Isoelectric point8.89
Molecular weight34659.16
Publications
PubMed=17994087

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblMetazoa

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:EnsemblMetazoa

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:EnsemblMetazoa









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24965
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     277.46|      44|      44|      47|      90|       1
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    1-   45 (62.96/15.35)	......MWK......YGQNQGNQGPAGAGGGGGnpnM..MPmgGFGMQGNMQQMHMSPQ
   47-   90 (97.02/27.39)	QQ..QQMGM......MGGPGGMQMNPQAGGPGG...L..MP..GMSPQHQMQQQQMMQQ
   96-  136 (66.17/16.49)	QQ..GVTGMgggvvgMGGPGGM......GGAGG.......S..VM.PQQQQQPQNMPQQ
  137-  178 (51.32/11.24)	QQppQQL.T......PGTPAGV..AP..GGAGG...SnnML..AISQQNPHKEINIVQ.
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24965 with Med30 domain of Kingdom Metazoa
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