Description | Mediator of RNA polymerase II transcription subunit 17 |
Sequence | MDSLNNVALRPWPAPKKEELTQEDLLFKIEQLASERGHLRNITEQSLQEDIDAGKNAPGHGSDAGAVKEEEKKEKEAPSLQEQREKVLKVGMEMYSHLEWAKFAANNALDLVSLILSQDPNKRSLNFFSPTFQEQGLKQGIPLGSFGVSKENHEHRVRKPEEQHRLQDLEARQEAVAQGARMGALDSSVDEILKAAKNLEKQIRRETKYWHEIVTVSDKGWPIQRLRQNVRHAPFGVRYGLPEASDHFKARGFAPLQMDKDGSIILDPALALKPKILRVRVSIDGNITGTTQLSAADDLANQSLEKSIQLARDSLLEEELYYEMSLETRQLLAYGVEFRDSVIYVDAPQMGGVSHERKLLIDCIPRDDPVPSSRSHEHDWMARNIAEGLRLLLAHEHSMRLYRRSQLPPPLTTRKREKPSPSLLRTLLAVIHHIEAVDSLYVYLESLARTLNSVGLDVTLDTTRETSWATLVESLGTPSMKGQSATDQLFEVFMKPFDGKATMSLPVSTGAQHESLSITTRTIIGQPTFGTEHKLILPPTLGIDLGLSQQQKFAAVEEITSLLQNEYSSRAQALSQDARLSIKGKDRKKGVKSSKDIEIELNNGELKASVLIVDTVQDIEEVEQSRTWSGKDGNNSSLREVIKSWVD |
Length | 647 |
Position | Head |
Organism | Pyrenophora tritici-repentis (strain Pt-1C-BFP) (Wheat tan spot fungus) (Drechslera tritici-repentis) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes> Pleosporomycetidae> Pleosporales> Pleosporineae> Pleosporaceae> Pyrenophora. |
Aromaticity | 0.05 |
Grand average of hydropathy | -0.528 |
Instability index | 51.72 |
Isoelectric point | 5.92 |
Molecular weight | 72549.28 |
Publications | PubMed=23316438 |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364140 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP24948 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 214.12| 62| 220| 315| 377| 1 --------------------------------------------------------------------------- 315- 377 (100.92/74.13) LLEEELYYEMSLETRQLLAyGVEFRDSVIYVD.APQMGGVSHERKLL.IDCIPRDD......PVPSSRSHE 478- 514 (23.89/10.25) ..................................PSMKGQSATDQLFeVFMKPFDGkatmslPVSTGAQHE 536- 598 (89.31/60.05) ILPPTLGIDLGLSQQQKFA.AVEEITSLLQNEySSRAQALSQDARLS.IKGKDRKK......GVKSSKDIE --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 217.76| 70| 116| 13| 83| 2 --------------------------------------------------------------------------- 13- 83 (110.21/79.86) PAPKKEELTQEDLL..FKIEQLASERgHLRNITEQSLQEDIDAGKNAPGHGSDAGAVKEE.EKKEKEAPSLQEQ 130- 202 (107.56/72.89) PTFQEQGLKQGIPLgsFGVSKENHEH.RVRKPEEQHRLQDLEARQEAVAQGARMGALDSSvDEILKAAKNLEKQ --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 68.00| 22| 38| 389| 411| 4 --------------------------------------------------------------------------- 389- 411 (37.12/28.59) LRLLLAHEH......SMRLYRRSqLPPPL 424- 451 (30.88/18.40) LRTLLAVIHhieavdSLYVYLES.LARTL --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) EDLLFKIE 2) VALRPW | 23 7 | 30 12 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab