<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24929
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MSAHDMSLLGGDSMSIDSGIQVMQSIQGMDGAMALDDVDLFGDPVMDNALGTLPLTSRPPPSKQLQQRLDQLRARGCCQGIAWGRLGNIACVSKDGMSVDIRYMRCNPENGEWDMNDPSSSATISLVHGPPSFISLPSAGAPIVHVAWSPTTHMADLAVIDALGRISILFFPLQINRPYPMRKWDSDPVDDLHSVVGCHWLPIGNAASQSRGFLTQCSGAHWAGSEYKYNHMAQPAFGPSHPHPGRSALVCVTTNGLLRLFYQISSRHEETALELESVTAADDLITHASFCCDKPLATASKQLRVVRVGVNWGNPPSDKQVHPGSIQLRPSMKEVHVATTSWLQHGPSESTLDFSMAQLSHLLVLPSFMETSNPPTFAPAVVVTVRSYLPNETSPYDQETQSIIDRWEVLNDQAQAPHPAFEQLGPRNGAGAAPPTMTRLRKLEPVTIPKVVISMQTTTIQLGRVVCFTFSDGTVQYRDRFTMAELYNEHNTENINSPHQVGFQFDDPTPCLQVAFSPSNFAFVQVCEDNTLKLRKLHYTMGDLGSLQDVQARAVLASLTMPISFAWQQQMTFDDILAVVRPLTQHPKFTNALFKEIITLLRTVVDYSEEQQQLVDTLIRNNQLQSCLSLLNHFGFNGNFEARSFHGKFASVALNLRNIIVLIVLANHSPQKSNGVLNPLDESEVVETLVGCAEWAVSLFSWLIDSLFNLLDDPEFMALLSDQRRFQELANYLHTRNDVSVYLLLCSSTRSLLQVACRRVAGLEEISSRALTYYKTHSVTETGAALHHAYQRMYRTSSSSPVKPQDFERLLSTLGRDISTAYQRTLTAMAKSKDQTQPGATEQQQQQAQQRVELFVKSAQNRWELEMLSGANPPNIFREVLARLFTSTLTTFKALTDPAKLYFANYDLLEVNDDAKTLRARKKAGKYVDVFKRVELVAGQQQQNTQSFPPAAVTNGAQGKGGGGENVKTEAGVWGAAGVKLGGTPSLTLGLAGGGGGGSAGAGNGANGGAAVAMTQVHSPRDEGAGGAGGGHAIRWRRCVRCASVMEDIMNQRPGFTYVLAQQRKCCCGGAWALVANGALG |
Length | 1081 |
Position | Tail |
Organism | Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) (Pleurage anserina) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes>
Sordariomycetidae> Sordariales> Chaetomiaceae> Podospora>
Podospora anserina.
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Aromaticity | 0.07 |
Grand average of hydropathy | -0.201 |
Instability index | 42.50 |
Isoelectric point | 6.38 |
Molecular weight | 118100.64 |
Publications | PubMed=18460219
PubMed=24558260
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Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
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GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP24929
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 143.27| 29| 31| 972| 1000| 1
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972- 1000 (52.30/28.63) GVWGAAGVK..LGGTPSLTLGLAGG....GGGGSA
1005- 1033 (49.56/26.73) GANGGAAVA..MTQVHSPRDEGAGG....AGGGHA
1039- 1073 (41.41/21.08) CVRCASVMEdiMNQRPGFTYVLAQQrkccCGGAWA
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 43.80| 13| 15| 411| 424| 2
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411- 424 (19.67/15.44) NDQAQAPhPAFEQL
428- 440 (24.14/13.35) NGAGAAP.PTMTRL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 66.81| 21| 24| 554| 577| 3
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554- 577 (30.43/23.98) AVLASLTMPISFAwqqQMTFDDIL
578- 598 (36.38/19.28) AVVRPLTQHPKFT...NALFKEII
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 38.31| 10| 29| 783| 792| 6
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783- 792 (19.52/12.11) GAALHHAYQR
815- 824 (18.79/11.39) GRDISTAYQR
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 81.70| 18| 70| 459| 476| 8
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459- 476 (33.09/20.26) TIQLGRVVCFTFSD.GT....VQ
494- 515 (25.49/13.93) NINSPHQVGFQFDD.PTpclqVA
531- 548 (23.12/11.95) TLKL.RKLHYTMGDlGS....LQ
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 102.52| 24| 24| 707| 730| 9
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677- 696 (27.87/17.36) .LNPLDESEVVETLVG...CAEWA
707- 730 (39.30/27.76) LFNLLDDPEFMALLSDQRRFQELA
733- 756 (35.36/24.17) LHTRNDVSVYLLLCSSTRSLLQVA
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 69.13| 20| 234| 63| 84| 13
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63- 84 (33.96/29.74) KQLQQRLDQLRARGCcqGIAWG
294- 313 (35.17/22.17) KPLATASKQLRVVRV..GVNWG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 59.04| 20| 234| 113| 138| 14
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113- 137 (34.53/22.32) WDMNDPSSS......ATISlvhgpPSFI..SLP
342- 374 (24.51/ 8.88) WLQHGPSEStldfsmAQLShllvlPSFMetSNP
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