<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24896

Description Uncharacterized protein
SequenceMAFRPSNDFFLNGTRLRSRLPVTVPLRFLFTLRLRPHLVVLPRLAVNNLLYLLPAVVQTPTIYRVLHTKGVNPLELLEQLNLPMIASPPIFHRPATVRASVIKTKRSKSASFKEAFQQIEDFIANPEYSTQLLTGELDNRPETDVEFNKLRETEQHDDVECAGKGLTTRTDAFHKNCSTRLWDATYTIQGPLTWRRFHRLPDEAQANANLNPYQTDSVPVRQYWDKLLHEPYSNARDNAQKSSARKKSLDLYIFSPVRRNVPASHLLNHPVAVARLFTPGINIQTSNLKFLPRARHHGLRYRKDPAQLRPLGCGVEPHRQQVPQAQEAGAEDADTPSDVIEFTDGTNSCVSDPQEAKDLVFGNCCVMSANLVGKGFVQMTGGDPEKSQDIAKQIICKEAGTWMHNSKNQAKEGTLIILVAKQFGSKSAISRNTFYLGDMVNVTKMNLVQTIHGVTLAGIAKGLISTDLERETLVSSSAITSMAPESIPPTQQQIVREQRKRTSKIRKALKIRPTMEH
Length517
PositionMiddle
OrganismCulex quinquefasciatus (Southern house mosquito) (Culex pungens)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Nematocera> Culicoidea> Culicidae> Culicinae> Culicini> Culex> Culex.
Aromaticity0.07
Grand average of hydropathy-0.428
Instability index43.22
Isoelectric point9.56
Molecular weight58076.81
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24896
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     102.81|      18|      35|      27|      44|       1
---------------------------------------------------------------------------
   10-   26 (22.13/ 8.91)	.FLNGTRLRSRLPVTVPL
   27-   44 (31.43/15.08)	RFLFTLRLRPHLVVLPRL
   45-   62 (24.90/10.74)	AVNNLLYLLPAVVQTPTI
   64-   80 (24.36/10.39)	RVLHTKGVNP.LELLEQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.86|      18|      36|     219|     236|       2
---------------------------------------------------------------------------
  219-  236 (35.98/25.85)	PVRQY..WDKLLHEPYSNAR
  256-  275 (27.88/18.36)	PVRRNvpASHLLNHPVAVAR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.73|      14|      29|     352|     365|       3
---------------------------------------------------------------------------
  352-  365 (26.91/16.54)	DPQEAKDLVFGNCC
  383-  396 (24.82/14.77)	DPEKSQDIAKQIIC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.35|      16|      29|     292|     307|       5
---------------------------------------------------------------------------
  292-  307 (29.94/21.58)	PRARHHGLRYRKDPAQ
  323-  338 (27.42/19.12)	PQAQEAGAEDADTPSD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24896 with Med13 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) RPLGCGVEPHRQQVPQAQEAGAEDADTPSD
309
338










Molecular Recognition Features






MoRF SequenceStartStop




1) KALKIR
2) KKSLDLYIFS
507
246
512
255