Description | Mediator of RNA polymerase II transcription subunit 1 |
Sequence | MMHSANGKQQKIEQKVGGPTKMPNSTGTAGPGTAAGIGDKHESWQMELLMERLRSKAKSSHYKSFPEMSKTVRMSLLVRSVKSFVLKLSEDTSGLFISSDMFYLEIILDQNGKVQDVKVHHECKMKQQSCSELVSCLQRGDFVDFTTQLEANNIAKGLFVTLPDQHHCYYMNENKNLEGIVVSSIPFTEPQHVSKILVFLRQQALFNQLLSSCIRNNSSTTRTTDHDQLLVFEVTALSCQYITISLEHPFDESLAMVEFDLRNSLAVQVRVFCNGYESDERISKHISIVVQRTMSIPVTLRALIKIWEEDFEAKFKGKLSSNAGGNGCIDEVNFSLPMGPDDGGGSGPGGGGGGNGLGMNGQHTTGINGSGSSHQEFVDAKKIKYETQDLSKKRRVGEDFRNSPKSNNMEKSLKSEVNVADDDDCDESNNSDSYNSLGGNQTTTTTQHVSSSSASKSSSGKHTPTSPFALGIGEDGFRNKYTGKMNSLNSSPDTILKNSETTDCLEPTKAINQTSASNPEDSNLTVSVTTIEVGKQNMSSSSVLSNINLDKRPGIEIIPLSTSATSIPSSITITPIPVENCAGPSKNSSSDKKLSGSSSSSSSSNRKNSDSKTESDRAKLEKKKKRKHEEHQSQLQMGPPHKILSKNVSTDGPTSPSGGSRRISISPVPPKSGSSSSPRHSPVHHSSPKHQGSYGTSSPKHISGGSSGGGKPSMSALKSAASGGSPNSKSSSGSSTGKDEGSGVFSTGNTSKSSSSSGSSSSRDRDRDRERSDKKSVSNPKLKTPAVKLKQLDLATCGASLSAGVQLELINSNSSGGSSTGSSSIDYTDNSLFASSDMSKNSSVAAASTAGMLLLQQAMKNRKSSLSAVIDKLKSAQSGDESSLMLLPELAQQAGFTLKESSGSNKVASSSSASPTTMVSNIHGHTSSSASATGASSLTNTVAALDTQLSSTTSPVHGKSSEYLVKPSSDGMKLTIQNKKGSKSSLSSSSTNSKSSSKSGLKPGVSSGPGSKKLQSSQSFSGSFSSVSSSSSKSGSSTKSSFQKSNSSSSLSNSSGSLKSSSKSGSSSSSSGSSSKDKARNSSKSSSLISSNAMTLASQAAANAAVNANALNVMKMLGITSSIQNMEGFVKTLDTKFQIPKLSARSASSGNDLDKIKELRAVSAPTTPLQNMSQSPTGINDFSLPFNKLPGDVSPLHSAMLPNVMQKMFAGHDNAMLLRRSPNLEHQASNDGFPSQHGKGSTPPTPTISIPPPFPSPVGLQSHAMDFSNSSDSIDNSNLMLPPTRPSSTMSNHSSSDKLIDATGGNNSMDSFSSSPSAQAIAAAAAQFINKLDNTQQLVAALKNHHLNALSNAAAAAACSSAGSGSVTSPTSVSVHIMKSPAPSPLGMPGNSVDDDLMDDTLVQIGGK |
Length | 1408 |
Position | Middle |
Organism | Culex quinquefasciatus (Southern house mosquito) (Culex pungens) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Nematocera> Culicoidea> Culicidae> Culicinae> Culicini> Culex> Culex. |
Aromaticity | 0.04 |
Grand average of hydropathy | -0.549 |
Instability index | 55.09 |
Isoelectric point | 9.17 |
Molecular weight | 147401.80 |
Publications |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364059 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP24889 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 98.83| 27| 28| 1015| 1041| 1 --------------------------------------------------------------------------- 984- 1024 (32.18/ 7.37) SSLS...SSSTNSKSSSKSGlkpgvssgpgskklQSSQSF...SGSF 1025- 1058 (34.06/ 8.34) SSVS...SSSSKSGSSTKSS..........fqksNSSSSLsnsSGSL 1059- 1088 (32.59/ 7.58) KSSSksgSSSSSSGSSSKDK..............ARNSSK...SSSL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 8| 559.38| 83| 83| 672| 754| 2 --------------------------------------------------------------------------- 321- 367 (49.52/11.09) ....................................................SNA.....G..........GNGCIDE....VNF....SLPMG..........PDD.........GGG.SGPGGGGG.GNGL...G......MN...GQHTTGI 368- 450 (70.02/19.10) NGS.GSS..HQ......EfVDAkkikyetqdlSKKRRVGEDFRNSPK.....SNN.....M..........EK....S....LKSevnvADDDDC.........DES.........NNSdSYNSLGGNQ..............TT...TTTQHVS 453- 540 (65.49/17.33) SASkSSSGKHT......P.........................TSPFALGIGEDGfrnkyT..........GK..MNS....LNS....SPDTIL.........KNSettdcleptKAI.NQTSASNPEDSNLtvsV......TTievGKQNMSS 561- 625 (69.50/18.90) STS.ATSIPSSititpiP.VEN..........CAGPSKNS...SSDKKLSGSSS..............................S....SSSSNR.........KNS.........DSK.TESDRAKLE......................KKKK 633- 676 (53.12/12.49) SQL.QMGP.........P..HK..........ILSKNVSTDGPTSP...SGGSR..................RISISP....V...........P.........PKS.........GSS.S.................................. 677- 754 (130.91/42.90) ......SPRHS......P.VHH..........SSPKHQGSYGTSSPKHISGGSSG.....G..........GKPSMSA....LKS....AASGGS.........PNS.........KSS.SGSSTGKDEGSGV...F......ST...GNTSKSS 757- 819 (60.59/15.41) SGS.SSSRDRD......R.DRE..........RSDKK....SVSNPK......LK.....T..........PAVKLKQ....LDL....ATCGASlsagvqlelINS.........NSS.GGS...............................S 820- 901 (60.23/15.27) TGS.SS.............IDY..........TDNSLFASSDMSKNSSVAAASTA.....GmlllqqamknRKSSLSAvidkLKS....AQS.................................G.DESSLM...LlpelaqQA...GFTLKES --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 88.85| 23| 28| 1250| 1272| 3 --------------------------------------------------------------------------- 925- 951 (21.95/ 6.24) HTSSSASATGASSltntvA........ALD.TQLSS 1250- 1272 (41.20/19.28) IPPPFPSPVGLQS.....H........AMDFSNSSD 1281- 1310 (25.69/ 8.78) LPPTRPSS.TMSN.....HsssdklidATGGNNSMD --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 41.61| 12| 28| 972| 983| 4 --------------------------------------------------------------------------- 972- 983 (20.30/ 9.41) MKLTIQNKKGSK 1001- 1012 (21.30/10.28) LKPGVSSGPGSK --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 45.92| 14| 15| 1321| 1334| 5 --------------------------------------------------------------------------- 1321- 1334 (22.56/15.33) IAAAAAQFINKLDN 1339- 1352 (23.36/16.14) VAALKNHHLNALSN --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 87.92| 22| 47| 1120| 1142| 6 --------------------------------------------------------------------------- 1120- 1142 (34.12/23.75) TSSIQNMEGFVKTLDtKFQIP..KL 1146- 1159 (20.81/ 8.44) SASSGN......DLD...KIK..EL 1166- 1189 (32.99/18.06) TTPLQNMSQSPTGIN.DFSLPfnKL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 39.91| 13| 18| 1199| 1213| 10 --------------------------------------------------------------------------- 1199- 1213 (20.73/19.11) AML....PNVMQKmfAGHD 1215- 1231 (19.18/ 9.62) AMLlrrsPNLEHQ..ASND --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) KKKKRKH 2) SMSALKS | 622 713 | 628 719 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab