<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24881

Description Mediator complex subunit rgr-1
SequenceMNVAPDAHMPHPSPSGLMPSSLLNPQPSPIAHLPGPTNMPYMDGQSDTDGSPFTTAHSPAASNWSGSREMLRPSLRPGHYVQSEPQGAGSQIGTRLNIQLYRHSNVILIVEPNEKESSPNEMTYTLYLVLVKPSSVENSQPQDAEPSITSSVSQSGPGSVPPGCVLSVPELSSSAAHPPTSSSTTENDGMPKLYLKVQSLIEFDTFVAMHDPGTYVNELAGSKRKLGALGEGPSKQQKSWPTPWSHCNEKLPLANELTLRRIPHGGLQVEANGTIMAVMKINEQEKIDHPVSIDCLSTEVDSPAKL
Length306
PositionTail
OrganismCulex quinquefasciatus (Southern house mosquito) (Culex pungens)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Nematocera> Culicoidea> Culicidae> Culicinae> Culicini> Culex> Culex.
Aromaticity0.04
Grand average of hydropathy-0.482
Instability index68.95
Isoelectric point5.52
Molecular weight32822.51
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24881
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.09|      12|      24|      27|      38|       1
---------------------------------------------------------------------------
   27-   38 (24.76/10.32)	PSPIAHLPGPTN
   52-   63 (22.34/ 8.66)	PFTTAHSPAASN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.99|      13|      14|     134|     146|       3
---------------------------------------------------------------------------
  134-  146 (22.98/ 9.09)	SSVENSQPQDAEP
  150-  162 (23.00/ 9.11)	SSVSQSGPGSVPP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24881 with Med14 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GSVPPGCVLSVPELSSSAAHPPTSSSTTENDG
2) MNVAPDAHMPHPSPSGLMPSSLLNPQPSPIAHLPGPTNMPYMDGQSDTDGSPFTTAHSPAASNWSGSREMLRPSLRPGHYVQSEPQGAGSQIGTRL
3) NELAGSKRKLGALGEGPSKQQKSWPTPWSH
158
1
217
189
96
246










Molecular Recognition Features






MoRF SequenceStartStop




NANANA