<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24875

Description Transcription elongation factor S-II
SequenceMESFSLGLVIFRDFTEAAYSGQEQALDLLRELQRLNIDLDILTKTRIGMTVNELRKCSKDDEVISLAKSLIKSWKRFLAATPPSKESSKESSKSSSKSSSKSSSGGKGDDRKKDLEKEKEKEKKPTQTSFPPSSNTTDAVRLKCREMLASAIRVDGEPPEGCQTPEELGDELEEAIFSEFRNTDMKYKNRVRSRVANLKDLKNPSLRSNYINGAITAQRLAKMTPEEMASDEMKNLRDRFVKEAINDAQLATNQGTKTDLLKCGKCKKRNCTYNQLQTRSSDEPMTTFVLCNECGNRWKFC
Length301
PositionUnknown
OrganismCulex quinquefasciatus (Southern house mosquito) (Culex pungens)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Nematocera> Culicoidea> Culicidae> Culicinae> Culicini> Culex> Culex.
Aromaticity0.05
Grand average of hydropathy-0.840
Instability index44.93
Isoelectric point8.93
Molecular weight33985.19
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
translation elongation factor activity	GO:0003746	IEA:UniProtKB-KW
zinc ion binding	GO:0008270	IEA:InterPro

GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro
transcription, DNA-templated	GO:0006351	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24875
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.81|      24|      27|     206|     231|       1
---------------------------------------------------------------------------
  206-  231 (35.85/32.67)	LRSNYINGAITAQRLAkmTPEEMASD
  236-  259 (39.96/28.66)	LRDRFVKEAINDAQLA..TNQGTKTD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.35|      19|      27|      86|     111|       2
---------------------------------------------------------------------------
   86-  104 (29.17/23.81)	ESSKESSKSSSKSSSKSSS
  116-  134 (33.18/11.90)	EKEKEKEKKPTQTSFPPSS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24875 with Med26 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) TPPSKESSKESSKSSSKSSSKSSSGGKGDDRKKDLEKEKEKEKKPTQTSFPPSSNTTDAVRL
81
142










Molecular Recognition Features






MoRF SequenceStartStop




NANANA