<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24810

Description Protein CBR-MDT-9
SequenceMSSTSKEANKPSAESYLNKLYADLYHLVNSVEKGSGSELTVRLRNVESDIANFKEAIKTLPDISVGEGKQRGQISALYKQIEKKDELLESLAAFSLDARTNEDTLICKECKTVVILKNMTTEFLNEERDLPLPRQKKGIDHTQTEPVRGYFGVKDIFAFENVGFTRSSEGKRYLVCGECEQGPVGFVDTLTEMNYVTPERLAVQQTTNSPVEN
Length213
PositionMiddle
OrganismCaenorhabditis briggsae
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Rhabditina> Rhabditomorpha> Rhabditoidea> Rhabditidae> Peloderinae> Caenorhabditis.
Aromaticity0.07
Grand average of hydropathy-0.529
Instability index40.20
Isoelectric point5.18
Molecular weight23852.61
Publications
PubMed=14624247

Function

Annotated function 
GO - Cellular Component
cytosol	GO:0005829	IBA:GO_Central
membrane	GO:0016020	IBA:GO_Central

GO - Biological Function
guanyl-nucleotide exchange factor activity	GO:0005085	IBA:GO_Central
zinc ion binding	GO:0008270	IBA:GO_Central

GO - Biological Process
post-Golgi vesicle-mediated transport	GO:0006892	IBA:GO_Central
protein transport	GO:0015031	IEA:UniProtKB-KW
small GTPase mediated signal transduction	GO:0007264	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24810
No repeats found




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24810 with Med9 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




NANANA









Molecular Recognition Features






MoRF SequenceStartStop




1) KPSAESYLNKLYADLYHLVNS
10
30