<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24809

Description Protein CBG24901 (Fragment)
SequenceKIDGKFRSLTAKQEALPGNIRKIQKIDGKFRSLTAKQEALPGNIRKIQKIDGKFRSLTAKLEALPENIRKIQKIDGKFRSLTAKQEALPGNIRKIQKIDGKFRSLTAKLEALPENIRKIQKIDGKFRSLTAKLEALPENIRKIQKIDGKFRSLTAKQEALPGNIRKIQKIDSKFRSLTAKLEALPENIRKIQKIDGKFRSLTAKLEALPENIRNIQKIDGKFRSLTAKQEALPGNIRKIQKIDGKFRSLTAKLEALPENIRKIQKIDGKFRSLTAKQEALPGNIRKIQKIDGKFRSLTAKLEALPENIRKIQKIDGKFRSLTAKLEALPENIRKIQKIDGKFRSLTAKQEALPGNIRKIQKIDGKFRSLTAKLEALPENIRKIQKIDGKFRSLTAKLEALPENIRKIQKIDGKFRSLTAKQEALPGNIRKIQKIDGKFRSLTAKLEALPGNIRKIQKIDGKFRSLTAKQEALPGNIRKIQKIDGKFRSLTAKQEALPENIRKIQKIDGKFRSLTAKQEALPGNIRKIQKIDGKFRSLTAKQEALPGNIRKIQKIDGKFRSLTAKQEALPGNIRKIQKIDGKFRSLTAKQEALPGNIRKIQKIDGKFRSLTAKLEALPGNIRKIQKIDGKFRSLTAKQEALPGNIRKIQKIDGKFRSLTAKQEALPENIRKIQKIDGKFRSLTAKQEALPGNIRKIQKIDGKFRSLTAKLEALPENIRKIQKIDGKFRSLTAKLEALPENIRKIQKIDGKFRSLTAKQEALPGNIRKIQKIDSKFRSLTAKLEALPENIRKIQKIDGKFRSLTAKLEALPENIRNIQKIDGKFRSLTAKQEALPGNIRKIQKIDGKFRKNDALRENMIILFPCDPTAIRIPKGDWIQGRYRVTEVLGIGARSTCFRVEDRKNRNATHVCKVKRLRDGTQEAFETEIAALMKCRGSSCFPQVSDSFVNLSHRVIVLSFEGETIGDVLKRNRNMRFSNSNNLRISSQLTGALSFLHSTGYLHRNLTKDIILLKRSTNHVLVSLVDLGKVSLTTTREKCEFSSYWTSYHVASGKHFAERDDYISSMYLIGELAGFRLIDFIDHDLDEFKKIFHSRPTSFFKEPEKWIGRIVEYVDVMPCEGTKINMNEMFLLYATAIDNVSPHSPIAYKTVNNAIKVQ
Length1154
PositionMiddle
OrganismCaenorhabditis briggsae
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Rhabditina> Rhabditomorpha> Rhabditoidea> Rhabditidae> Peloderinae> Caenorhabditis.
Aromaticity0.06
Grand average of hydropathy-0.582
Instability index47.58
Isoelectric point10.41
Molecular weight131197.14
Publications
PubMed=14624247

Function

Annotated function 
GO - Cellular Component
cytoplasm	GO:0005737	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein serine/threonine kinase activity	GO:0004674	IBA:GO_Central

GO - Biological Process
peptidyl-serine phosphorylation	GO:0018105	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24809
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            36|    1914.04|      22|      22|     255|     276|       1
---------------------------------------------------------------------------
    1-   24 (54.67/29.98)	KIDGKFRSLTAKqeALPGNIRKIQ
   25-   48 (54.67/29.98)	KIDGKFRSLTAKqeALPGNIRKIQ
   49-   72 (54.08/29.57)	KIDGKFRSLTAKleALPENIRKIQ
   73-   96 (54.67/29.98)	KIDGKFRSLTAKqeALPGNIRKIQ
   97-  120 (54.08/29.57)	KIDGKFRSLTAKleALPENIRKIQ
  121-  144 (54.08/29.57)	KIDGKFRSLTAKleALPENIRKIQ
  145-  168 (54.67/29.98)	KIDGKFRSLTAKqeALPGNIRKIQ
  169-  192 (50.84/27.36)	KIDSKFRSLTAKleALPENIRKIQ
  193-  216 (51.85/28.05)	KIDGKFRSLTAKleALPENIRNIQ
  217-  240 (54.67/29.98)	KIDGKFRSLTAKqeALPGNIRKIQ
  241-  264 (54.08/29.57)	KIDGKFRSLTAKleALPENIRKIQ
  265-  288 (54.67/29.98)	KIDGKFRSLTAKqeALPGNIRKIQ
  289-  312 (54.08/29.57)	KIDGKFRSLTAKleALPENIRKIQ
  313-  336 (54.08/29.57)	KIDGKFRSLTAKleALPENIRKIQ
  337-  360 (54.67/29.98)	KIDGKFRSLTAKqeALPGNIRKIQ
  361-  384 (54.08/29.57)	KIDGKFRSLTAKleALPENIRKIQ
  385-  408 (54.08/29.57)	KIDGKFRSLTAKleALPENIRKIQ
  409-  432 (54.67/29.98)	KIDGKFRSLTAKqeALPGNIRKIQ
  433-  456 (54.67/29.98)	KIDGKFRSLTAKleALPGNIRKIQ
  457-  480 (54.67/29.98)	KIDGKFRSLTAKqeALPGNIRKIQ
  481-  504 (54.08/29.57)	KIDGKFRSLTAKqeALPENIRKIQ
  505-  528 (54.67/29.98)	KIDGKFRSLTAKqeALPGNIRKIQ
  529-  552 (54.67/29.98)	KIDGKFRSLTAKqeALPGNIRKIQ
  553-  576 (54.67/29.98)	KIDGKFRSLTAKqeALPGNIRKIQ
  577-  600 (54.67/29.98)	KIDGKFRSLTAKqeALPGNIRKIQ
  601-  624 (54.67/29.98)	KIDGKFRSLTAKleALPGNIRKIQ
  625-  648 (54.67/29.98)	KIDGKFRSLTAKqeALPGNIRKIQ
  649-  672 (54.08/29.57)	KIDGKFRSLTAKqeALPENIRKIQ
  673-  696 (54.67/29.98)	KIDGKFRSLTAKqeALPGNIRKIQ
  697-  720 (54.08/29.57)	KIDGKFRSLTAKleALPENIRKIQ
  721-  744 (54.08/29.57)	KIDGKFRSLTAKleALPENIRKIQ
  745-  768 (54.67/29.98)	KIDGKFRSLTAKqeALPGNIRKIQ
  769-  792 (50.84/27.36)	KIDSKFRSLTAKleALPENIRKIQ
  793-  816 (51.85/28.05)	KIDGKFRSLTAKleALPENIRNIQ
  817-  840 (54.67/29.98)	KIDGKFRSLTAKqeALPGNIRKIQ
  841-  856 (20.96/ 6.99)	KIDGKFR....KndALRENM....
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24809 with Med9 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




NANANA









Molecular Recognition Features






MoRF SequenceStartStop




NANANA