<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24809

Description Protein CBG24901 (Fragment)
SequenceKIDGKFRSLTAKQEALPGNIRKIQKIDGKFRSLTAKQEALPGNIRKIQKIDGKFRSLTAKLEALPENIRKIQKIDGKFRSLTAKQEALPGNIRKIQKIDGKFRSLTAKLEALPENIRKIQKIDGKFRSLTAKLEALPENIRKIQKIDGKFRSLTAKQEALPGNIRKIQKIDSKFRSLTAKLEALPENIRKIQKIDGKFRSLTAKLEALPENIRNIQKIDGKFRSLTAKQEALPGNIRKIQKIDGKFRSLTAKLEALPENIRKIQKIDGKFRSLTAKQEALPGNIRKIQKIDGKFRSLTAKLEALPENIRKIQKIDGKFRSLTAKLEALPENIRKIQKIDGKFRSLTAKQEALPGNIRKIQKIDGKFRSLTAKLEALPENIRKIQKIDGKFRSLTAKLEALPENIRKIQKIDGKFRSLTAKQEALPGNIRKIQKIDGKFRSLTAKLEALPGNIRKIQKIDGKFRSLTAKQEALPGNIRKIQKIDGKFRSLTAKQEALPENIRKIQKIDGKFRSLTAKQEALPGNIRKIQKIDGKFRSLTAKQEALPGNIRKIQKIDGKFRSLTAKQEALPGNIRKIQKIDGKFRSLTAKQEALPGNIRKIQKIDGKFRSLTAKLEALPGNIRKIQKIDGKFRSLTAKQEALPGNIRKIQKIDGKFRSLTAKQEALPENIRKIQKIDGKFRSLTAKQEALPGNIRKIQKIDGKFRSLTAKLEALPENIRKIQKIDGKFRSLTAKLEALPENIRKIQKIDGKFRSLTAKQEALPGNIRKIQKIDSKFRSLTAKLEALPENIRKIQKIDGKFRSLTAKLEALPENIRNIQKIDGKFRSLTAKQEALPGNIRKIQKIDGKFRKNDALRENMIILFPCDPTAIRIPKGDWIQGRYRVTEVLGIGARSTCFRVEDRKNRNATHVCKVKRLRDGTQEAFETEIAALMKCRGSSCFPQVSDSFVNLSHRVIVLSFEGETIGDVLKRNRNMRFSNSNNLRISSQLTGALSFLHSTGYLHRNLTKDIILLKRSTNHVLVSLVDLGKVSLTTTREKCEFSSYWTSYHVASGKHFAERDDYISSMYLIGELAGFRLIDFIDHDLDEFKKIFHSRPTSFFKEPEKWIGRIVEYVDVMPCEGTKINMNEMFLLYATAIDNVSPHSPIAYKTVNNAIKVQ
Length1154
PositionMiddle
OrganismCaenorhabditis briggsae
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Rhabditina> Rhabditomorpha> Rhabditoidea> Rhabditidae> Peloderinae> Caenorhabditis.
Aromaticity0.06
Grand average of hydropathy-0.582
Instability index47.58
Isoelectric point10.41
Molecular weight131197.14
Publications
PubMed=14624247

Function

Annotated function 
GO - Cellular Component
cytoplasm	GO:0005737	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein serine/threonine kinase activity	GO:0004674	IBA:GO_Central

GO - Biological Process
peptidyl-serine phosphorylation	GO:0018105	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24809
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            36|    1914.04|      22|      22|     255|     276|       1
---------------------------------------------------------------------------
    1-   24 (54.67/29.98)	KIDGKFRSLTAKqeALPGNIRKIQ
   25-   48 (54.67/29.98)	KIDGKFRSLTAKqeALPGNIRKIQ
   49-   72 (54.08/29.57)	KIDGKFRSLTAKleALPENIRKIQ
   73-   96 (54.67/29.98)	KIDGKFRSLTAKqeALPGNIRKIQ
   97-  120 (54.08/29.57)	KIDGKFRSLTAKleALPENIRKIQ
  121-  144 (54.08/29.57)	KIDGKFRSLTAKleALPENIRKIQ
  145-  168 (54.67/29.98)	KIDGKFRSLTAKqeALPGNIRKIQ
  169-  192 (50.84/27.36)	KIDSKFRSLTAKleALPENIRKIQ
  193-  216 (51.85/28.05)	KIDGKFRSLTAKleALPENIRNIQ
  217-  240 (54.67/29.98)	KIDGKFRSLTAKqeALPGNIRKIQ
  241-  264 (54.08/29.57)	KIDGKFRSLTAKleALPENIRKIQ
  265-  288 (54.67/29.98)	KIDGKFRSLTAKqeALPGNIRKIQ
  289-  312 (54.08/29.57)	KIDGKFRSLTAKleALPENIRKIQ
  313-  336 (54.08/29.57)	KIDGKFRSLTAKleALPENIRKIQ
  337-  360 (54.67/29.98)	KIDGKFRSLTAKqeALPGNIRKIQ
  361-  384 (54.08/29.57)	KIDGKFRSLTAKleALPENIRKIQ
  385-  408 (54.08/29.57)	KIDGKFRSLTAKleALPENIRKIQ
  409-  432 (54.67/29.98)	KIDGKFRSLTAKqeALPGNIRKIQ
  433-  456 (54.67/29.98)	KIDGKFRSLTAKleALPGNIRKIQ
  457-  480 (54.67/29.98)	KIDGKFRSLTAKqeALPGNIRKIQ
  481-  504 (54.08/29.57)	KIDGKFRSLTAKqeALPENIRKIQ
  505-  528 (54.67/29.98)	KIDGKFRSLTAKqeALPGNIRKIQ
  529-  552 (54.67/29.98)	KIDGKFRSLTAKqeALPGNIRKIQ
  553-  576 (54.67/29.98)	KIDGKFRSLTAKqeALPGNIRKIQ
  577-  600 (54.67/29.98)	KIDGKFRSLTAKqeALPGNIRKIQ
  601-  624 (54.67/29.98)	KIDGKFRSLTAKleALPGNIRKIQ
  625-  648 (54.67/29.98)	KIDGKFRSLTAKqeALPGNIRKIQ
  649-  672 (54.08/29.57)	KIDGKFRSLTAKqeALPENIRKIQ
  673-  696 (54.67/29.98)	KIDGKFRSLTAKqeALPGNIRKIQ
  697-  720 (54.08/29.57)	KIDGKFRSLTAKleALPENIRKIQ
  721-  744 (54.08/29.57)	KIDGKFRSLTAKleALPENIRKIQ
  745-  768 (54.67/29.98)	KIDGKFRSLTAKqeALPGNIRKIQ
  769-  792 (50.84/27.36)	KIDSKFRSLTAKleALPENIRKIQ
  793-  816 (51.85/28.05)	KIDGKFRSLTAKleALPENIRNIQ
  817-  840 (54.67/29.98)	KIDGKFRSLTAKqeALPGNIRKIQ
  841-  856 (20.96/ 6.99)	KIDGKFR....KndALRENM....
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24809 with Med9 domain of Kingdom Metazoa
Unable to open file!