<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24800

Description Uncharacterized protein
SequenceMWHVTDSAWPNHVFVVFEDTSKPTRAGADAPAEAASATPGLRRWHAHVLSAEIHTLLRQSSLPGPLGSPAGTPGPGAWIQRGAQVLLDGFSFRVKLGAHSQMRRGALDAVGEQEECILSIGNVIVGSDRIAGGIVEIQYLPLTRLAPDSTLLGSILTMLLPPDIVHLLVPPSAPPMPLSLPTMALPTMISPTQLAEIVPASGTSSSASFTPGAPGFDPWEDEVNTDSIGWSGVEMRRRMAYVHLVMLRAEGLA
Length253
PositionHead
OrganismMalassezia globosa (strain ATCC MYA-4612 / CBS 7966) (Dandruff-associated fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Ustilaginomycotina> Malasseziomycetes> Malasseziales> Malasseziaceae> Malassezia.
Aromaticity0.06
Grand average of hydropathy0.109
Instability index52.53
Isoelectric point5.55
Molecular weight26825.49
Publications
PubMed=18000048

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24800
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.20|      24|      26|     147|     172|       1
---------------------------------------------------------------------------
  147-  172 (39.86/23.14)	PDSTLlgSILTMLLP....PDIVHLLVPPS
  174-  201 (40.34/18.34)	PPMPL..SLPTMALPtmisPTQLAEIVPAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     107.44|      30|      32|      38|      67|       2
---------------------------------------------------------------------------
    9-   27 (27.58/11.49)	......W...PNHVF.............VVFEDTSKPTRAG
   38-   67 (56.11/29.69)	TPGLRRW...HAHVL....SAEI....HTLLRQSSLPGPLG
   72-  107 (23.75/ 9.05)	TPGPGAWiqrGAQVLldgfSFRVklgaHSQMRRGAL.....
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24800 with Med20 domain of Kingdom Fungi
Unable to open file!