<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24798

Description CMGC/CDK/CDK8 protein kinase
SequenceMQQQQQQQQQVSLDEWVSNVMQHDPMRVYRARRDAHHRPVTSKYAILGFISSGTYGRVYKAQSINGGELLAIKKFKPDKEGDVVTYTGISQSAIREIALNREINHENVVALREVILEDKSIYMVFEYAEHDFLQVIHHYYQTIRTSIPTAVLKSLIYQLFNGLIYLHASHILHRDLKPANILITSQGVVKIGDLGLARLCYEPLQPLFAGDKVVVTIWYRAPELLMGAKHYNKAIDCWAVGCVMAELASLRPIFKGEEAKLDSKKNVPFQRDQLIKIFEVLGTPDERDWPGVVDMPEYRNMKLLDHFSNRLSDWCHTRIRSPQGYDLLRQLFAYDPDNRLTAEQAIQHKWFHEDPLPTWNAFQSLAQHQIPPCRRITQDEAPSMMPMATQQNTQQAMGGGHIAGGAGAPFSKPGSTASFASLSGGGPYAQSQGGTGGHTAHTRKKARMG
Length449
PositionKinase
OrganismCoprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) (Inky cap fungus) (Hormographiella aspergillata)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes> Agaricomycetidae> Agaricales> Psathyrellaceae> Coprinopsis.
Aromaticity0.09
Grand average of hydropathy-0.393
Instability index42.04
Isoelectric point8.76
Molecular weight50675.28
Publications
PubMed=20547848

Function

Annotated function 
GO - Cellular Component
euchromatin	GO:0000791	IEA:EnsemblFungi
mediator complex	GO:0016592	IEA:EnsemblFungi

GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
cyclin-dependent protein serine/threonine kinase activity	GO:0004693	IEA:EnsemblFungi

GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IEA:EnsemblFungi









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24798
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.06|      22|      24|     381|     403|       2
---------------------------------------------------------------------------
  381-  403 (37.98/22.98)	APSMMPMATQQNTQQAmGGGHIA
  408-  429 (40.07/20.17)	APFSKPGSTASFASLS.GGGPYA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.96|      15|      17|     332|     348|       4
---------------------------------------------------------------------------
  332-  346 (25.99/ 8.84)	FAYDPDNRLTAEQAI
  351-  365 (27.96/13.65)	FHEDPLPTWNAFQSL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24798 with CDK8 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IPPCRRITQDEAPSMMPMATQQNTQQAMGGGHIAGGAGAPFSKPGSTASFASLSGGGPYAQSQGGTGGHTAHTRKKARMG
370
449










Molecular Recognition Features






MoRF SequenceStartStop




1) HTAHTRKKARMG
438
449