Description | Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MAQNTVLAAILHLQNSPGFVYRQYNAPDYDACELARRTVVDASTDILNSVHVAVHGSPSPCLYLFLITSAEAVHDAIARVNTYAFDYLQGTEPAFLPLDQLSRPTTTDASTTEIYSLFLDAVRSRAIADIVDTASTLPRHVHRFKDGFIIHRTPAVSDWAAGWEHKLLNRPVVYFHLQIHFACSAGADSPSHLLIHLTPISTPFSNIPINTALRPGSPIILLPYGTPAYFLASYNGPSNALTKLFDDSLRGLGAGRWSLDGQSASSPPFIIGWIRVENKQGEDKGTPFVWPTRLCLSYLPSHHVKPLDPLPELPAALQASPLLSSPTVPAFNDLPSPPSALSHLPSVKALHSFTVSKSKDIRQLAAEVSSYVDVVARDRERERERLKKEREAGSSPKLMRKSAPTPTQPTASSTPKPPQPPPAQQAVVDQIFYPSPPQTTSLPTAPEYIPPKPVQEATQPTFSQPPPPPPAPVQNGDSSQKSFDLFGNANSNWSQTSDSYFSDMDFGMDVDFNNMNSGSNQANNNYTSHESALDFDFTEDDFSFFDQPSKSSTLPKPTSSVLPTPGHDQSRFTPNTSPHKTSTTAPNVARGLEDIHLSGPGPPSAGFQTPWTPGDMFTPRSAGDATDSHHPPDLVPSSPGPSPEPPSGPGTPTVQINFEFTGGKGKSTNEHASGLFDPIPFAPYHSEVDSKYSSGKFALISPPLTDITTPSSSPLSEEGQSWRKRYESATDPRLGVVRQLIGVKRKLEAVANTHARPRASSTPSWLQQCEDWSSDPNAMDVDTNDDDDGQSDMDSDDDSLQPDSELESPALSRPATPPPSYLPPGPSLLHHKFDHTQLLPISTPSRPPGSSSSASHVRDREPSAGPIPSVPTPVSPAAMPGATSEKVKMLQEVAIAVAQESVENPLWAEAWDTVNRTSTLSKRNQAPMNIWPDDLRVGAELLGKMKAAEGPLDLTRLFNLRESESSSNEIVLNSQTEPSNKPLQPLEQPHISVGKGQAIIQVLPSALRFADKLGLGPKNGTKDLDVYTIFEEGDEHRRSRVDSWLSTVSSAYSTRSFGAFRRGKSASASNGLFPARLDSNFRKTLSSLLSNLPPSNHPTLVLLIIPVSLMTLSSPSLRHIISSTKKAAQSHPTRQLVFHLVPEPLLLFMEESHKSHDTLNLLCSSLYDRIPVTVSRRLNGHLYAPGPGHRSFPAYSFTLSRPPVNKVTYSRSTRPSLDVLDRYTFLHVGYKLSPCKKWLLASCLDQRGEYCRTAVWLVPPQDEEAEESVEAFVADKVVGFGMNIALQANVEWRIVISKLGRVSIPEMEAWDSSIAHVLDDWKHPTALHIYLVSSQPDAPWTLLDFKGLSSHPPTSNSSSLKHPRSSNISHKHNATNVIYTDSSWVVYAIYPRSRLTVPFPPPPSLFSGYQIPEPPSRLDSSVNSNPASNRNSHSLEDSNNPHSSNPSPSPSQNHTQASPQKERCDNANLPTLPQSSTTLIITTPSPSTDTPPHMVHIHLLKSFHSVSSNSPHPTDEETHRELTRNFFELGVLSCARRVGGSQSGFGGPVAGAEIGATNPNANPMLPYHLAAVDSMWRCLDVDWEQLEDPNSEV |
Length | 1593 |
Position | Kinase |
Organism | Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) (Inky cap fungus) (Hormographiella aspergillata) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes> Agaricomycetidae> Agaricales> Psathyrellaceae> Coprinopsis. |
Aromaticity | 0.07 |
Grand average of hydropathy | -0.468 |
Instability index | 59.20 |
Isoelectric point | 5.97 |
Molecular weight | 173792.04 |
Publications | PubMed=20547848 |
Annotated function |
Component of the SRB8-11 complex. The SRB8-11 complex is a
regulatory module of the Mediator complex which is itself involved in
regulation of basal and activated RNA polymerase II-dependent
transcription. The SRB8-11 complex may be involved in the
transcriptional repression of a subset of genes regulated by Mediator.
It may inhibit the association of the Mediator complex with RNA
polymerase II to form the holoenzyme complex.
ECO:0000256 RuleBase:RU364134 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP24794 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 4| 123.66| 27| 28| 486| 512| 1 --------------------------------------------------------------------------- 486- 510 (42.00/24.16) ..FG.NANSNWSQTSDSYFSDMDFGMDV 511- 535 (37.14/20.34) DF..nNMNSGSNQANNNYTSH.ESALDF 536- 551 (19.01/ 6.10) DFTE.DDFSFFDQPSKS........... 765- 781 (25.51/11.21) ..........WLQQCEDWSSDPN.AMDV --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 82.15| 17| 44| 291| 307| 5 --------------------------------------------------------------------------- 291- 307 (33.99/20.57) PTRLCLS.YLPSHHVKPL 314- 331 (23.97/11.65) PAALQASpLLSSPTVPAF 338- 350 (24.19/11.85) PS..ALS.HLPS..VKAL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 184.76| 48| 62| 1329| 1376| 6 --------------------------------------------------------------------------- 1329- 1376 (81.57/31.34) IYLVS..SQPDAPWTLLDFKGLS.SHPPTSNSSSL.KHPRSSNISHKHNATN 1389- 1433 (56.51/18.86) IYPRSrlTVPFPPPPSL.FSGYQiPEPPSRLDSSVnSNPASNRNSH...... 1435- 1468 (46.69/13.97) ...............LEDSNNPH.SSNP.SPSPSQ.NHTQASPQKERCDNAN --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 364.73| 99| 638| 190| 290| 7 --------------------------------------------------------------------------- 197- 290 (152.92/82.75) LTPISTPF..........................SNIPINTALR.P......GS...............PII.LLPygTPAYFLASYN.GPSNALTKLFD........DSLRGLGAGRW.SLDGQSASSPPFIIGWIRVENKQGEDK..GTPF.VW............. 838- 944 (103.79/49.96) LLPISTP...........................S........RpP......GSsssashvrdrepsagPIP.SVP..TPV........SPA.AMPGATS........EKVKMLQEVAI.AVAQESVENPLWAEAWDTVNRTSTLSKrnQAPMnIWpddlrvGAELLGK 945- 1080 (108.01/52.31) MKAAEGPLdltrlfnlresesssneivlnsqtepSNKPLQPLEQ.PhisvgkGQ...............AIIqVLP..SALRFADKLGlGPKNG.TKDLDvytifeegDEHRRSRVDSWlSTVSSAYSTRSF..GAFRRGKSASASN..G....LF......PARLDSN --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 4| 143.56| 26| 62| 557| 582| 9 --------------------------------------------------------------------------- 404- 422 (28.61/ 6.53) ......PTPTQ...PTASSTPK.PPQPPP 424- 441 (29.38/ 6.95) QQAVV.........DQI.FYPSP.PQTTS 557- 582 (46.53/16.26) PTSSVLPTPGH...DQSRFTPNTSPHKTS 619- 647 (39.05/12.20) PRSAGDATDSHhppDLVPSSPGPSPEPPS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 138.32| 41| 69| 15| 55| 12 --------------------------------------------------------------------------- 15- 55 (74.19/36.75) NSPGFVYRQYNAPDY.DACELARRTVVDASTDILNSVHV.AVH 81- 123 (64.13/30.88) NTYAFDYLQGTEPAFlPLDQLSRPTTTDASTTEIYSLFLdAVR --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 44.73| 14| 18| 1235| 1249| 14 --------------------------------------------------------------------------- 1235- 1249 (21.68/17.55) CKK..WLLAScLDQRGE 1251- 1266 (23.06/12.18) CRTavWLVPP.QDEEAE --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 51.18| 15| 18| 1199| 1215| 15 --------------------------------------------------------------------------- 1199- 1215 (23.00/20.27) LSRPPVNKVTYSRStrP 1220- 1234 (28.18/17.35) LDRYTFLHVGYKLS..P --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) SALDFDFT 2) SWRKRYE | 531 721 | 538 727 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab