<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24786

Description Uncharacterized protein
SequenceMSLTEITRNCFQSGISAQKVLRLTVYSISWWLALCKDFVNENPILGSPESVASGISNSVLFLYRSYPADSSLNKYLVYALKDGILPLHVYVATFLSAARSADFHSGATLDFLCDLALRTHEESSQIPPPALLSPSASPLANLETVQDALCLVQTSHTMILNYHHHKLVQNSERLLSHLLSYNTDVSQMTITQVWLAYSTTIDIMRVIQLDAQVRVRLKQFAMELNRVIQDDAKAAREAQMMQSMQVAKQSVGSLNSETDVVSLGLLWQYLVKHRARDFGAGNTEKVVALLVSAWRWSSWTAPVFCTQVFVSLFTCLTSCPTLGEPALWRAFILGRVPSYLAAFQKVVSTDQGLSTDLRTAFRQGIRAALRRQDLLVPGDHFISQATGSNGASDGQTSFARKFVQQLLKADLIEQTVVQEVEPLLGPSAPAHESQDMNVDLTCDFDVRLAQDPDLLEANHWLDRIWKDENSHRPLAALVLKRFELSSTGGDVEPFGRLCQLLYTHRFALDLVSLHVKVSDLVFYALSFLEAYDCESVGDPQTGVSQVGNVVLFLQYTIIRFQFEEEVFTKDGQSFSTTFLRHTDEVLPIESAQLPETAAFHSWFKALFDSSSEGIEDSILRQAFHHP
Length626
PositionTail
OrganismCoprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) (Inky cap fungus) (Hormographiella aspergillata)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes> Agaricomycetidae> Agaricales> Psathyrellaceae> Coprinopsis.
Aromaticity0.09
Grand average of hydropathy0.013
Instability index45.26
Isoelectric point5.50
Molecular weight69935.76
Publications
PubMed=20547848

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24786
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.17|      28|     265|      11|      39|       3
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   11-   39 (48.93/34.55)	FQSGiSAQKVLRLTVYSISW..WLA..LCKD.FV
  278-  310 (40.23/23.35)	FGAG.NTEKVVALLVSAWRWssWTApvFCTQvFV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.90|      16|      58|     258|     274|       4
---------------------------------------------------------------------------
  259-  274 (30.10/20.71)	DVVSLGLLWQYLVKHR
  490-  505 (31.79/16.84)	DVEPFGRLCQLLYTHR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24786 with Med5 domain of Kingdom Fungi
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