<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24771
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MAATGENLVSWSKTGLIAYADSTSQDGNLCITFLETINGTNWRFHPPKRYIIHPHLHESPSSETPGNVNGSNKRNSIGPVGTPNVGIPNVSKTTNYFFYDIKSVYWNNWFNLPGDMLAVCDELGNMTMLILGQSPNGPVTMDKLTMLFQDNVYKIHNKLIQLDESVNSVLKIEKKRTKKEYQTAISDFFWLSSSKAVISSQFCVLDSTINTYRNKVQQIPPYGVFHPPFMKYACLAIRKNGQIDFWYQFSNSKNHKKITLQLNNIQKNQSKELDWLEFSKITPINEEQYLLLSCYSKIANRLSFHKLHVNWNVNTTNHNQLNDPSLTISHIYEINLDRVDEEGKVLEFVNLQVLSKSPVEKDTAPEILLIYNVAGTNSSVVKRYRLNPIKLDPNYLLVLNPELTSLGEKALNPPQRYTLKFSGDLLFNQRIRQVSTEIIDGFITFYLQDGSIQTYNQSDWSLENERLQNQNRQGKFRDILTSVLSAGFTFPKLPTWSIVEWATVSPAMTGVIVKLVGKDEPKFLTVYQTDSSNEKNDSVNSTSFAFGFVAGIHRQLSAEDLSIACKTHLMNISKDNPERGKSFITSLISCIYSFFNITPDAPTEILDKMISSRPVQKAMLLQLELGSSFKNENIYEMARVVMSLRNVYFALNGVARNLQFAIEQLSGSNAAQLTNGKLFQTAFTKQDLVHSLIPIAKWIVKFVTCLVQDLLILINNPGINDSKLVYGVLGARIPRALILSILTEIKRVTQLITKFPENTFPVLNESSAFLKMILNESPVSFERFETFMIDINNKFSSLNEQEPSTKREPSLLVKAEIPPEYTKICDFILTCTKSTILSHIDPAFVYFTDTSGLGISKEELFDNSIIEILQPLEEGLVVDSSRLPEHFKGSKSFSKLNCDGISYDTFTKEELNNGTLKRCCRCGCITRAGYAISGDKTIIPTSIQTKRWPTMYARVCICSGYLYELEN |
Length | 967 |
Position | Tail |
Organism | Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) (Kluyveromyces polysporus) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes>
Saccharomycetales> Saccharomycetaceae> Vanderwaltozyma.
|
Aromaticity | 0.10 |
Grand average of hydropathy | -0.211 |
Instability index | 42.40 |
Isoelectric point | 7.96 |
Molecular weight | 109458.07 |
Publications | PubMed=17494770
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | core mediator complex GO:0070847 IEA:EnsemblFungi
mediator complex GO:0016592 IEA:EnsemblFungi
|
GO - Biological Function | RNA polymerase II activating transcription factor binding GO:0001102 IEA:EnsemblFungi
|
GO - Biological Process | negative regulation of transcription by RNA polymerase II GO:0000122 IEA:EnsemblFungi
positive regulation of transcription by RNA polymerase II GO:0045944 IEA:EnsemblFungi
regulation of establishment of protein localization to chromosome GO:0070202 IEA:EnsemblFungi
RNA polymerase II preinitiation complex assembly GO:0051123 IEA:EnsemblFungi
|
Interaction
Repeat regions
Repeats |
>MDP24771
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 254.90| 81| 185| 225| 313| 1
---------------------------------------------------------------------------
225- 313 (129.84/112.86) FHPPfMKYaclAIRKNGQIDF...WYQFSNSKNHKKITLQLNN..IQK.NQSkelDW.LEFSKITPINEEQYLLLSCYSKIANRLSFHKLHvNWNV
411- 498 (125.06/84.22) LNPP.QRY...TLKFSGDLLFnqrIRQVSTEIIDGFITFYLQDgsIQTyNQS...DWsLENERLQNQNRQGKFRDILTSVLSAGFTFPKLP.TWSI
---------------------------------------------------------------------------
|