<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24766

Description Uncharacterized protein
SequenceMNNQNFNYNSIQYLNQTGGELRRDSNNGDETNNTSNIMNYQYPGGNELISRQYRAPVSLPASGGVGVAPHQQALPTTALQNPPQYTNNYTQTSNIQYYYPTNAMQQQQQQQQQQQQQQQQQQQQAINGIPSYPYGTNIPKSISPTSTPYPIQQGYNPYPDTFLKESSRINNIVPSNYQYPGFQQYNTGGNITRPMLRQSSANAIYSSTTTPMYPYSGGNGSSSSGGSFKNGENSEFFMNNGLNNLSTMIWEDEDTICYQVVVNGITVLRRDDNNMINGTKLLNVTKMTRGRRDRILRAEKIRHVVKIGSMHLKGVWIPLERAKRMAQMENIYNKLYPLFVSDIQSVIRQYQRASAGGVGVSPAGVMQPGLGLSSATVVEYGEDSEHTNVDNDNNETNHSHNNTNNININHNNNHNHNHNQTNTNNNHNHTNNHTNTNTNTNTNTNTNTNTNNTNHNTNTNINHNHNHNTNHNHNSSSTSTSTHTHTHTHTHADTSQKDIDRTAYTTVSQQHPIQLPPPPEPHY
Length523
PositionTail
OrganismVanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) (Kluyveromyces polysporus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Saccharomycetaceae> Vanderwaltozyma.
Aromaticity0.07
Grand average of hydropathy-1.126
Instability index42.94
Isoelectric point7.45
Molecular weight58782.84
Publications
PubMed=17494770

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
DNA binding	GO:0003677	IEA:UniProtKB-KW

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24766
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     160.44|      17|      17|     398|     414|       1
---------------------------------------------------------------------------
  398-  414 (37.10/11.73)	HSHN..NTNNININHNNNH
  416-  433 (32.86/ 9.54)	HNHNqtNTNN.NHNHTNNH
  436-  452 (27.70/ 6.88)	TNTN..TNTNTNTNTNTNN
  453-  467 (34.05/10.16)	TNH...NTN.TNINHNHNH
  471-  487 (28.72/ 7.41)	HNHN..SSSTSTSTHTHTH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     125.35|      27|      72|      51|      82|       2
---------------------------------------------------------------------------
   55-   81 (42.24/19.71)	APVSLPASGGVGVAPHQQALPTTALQN
  143-  165 (42.95/ 9.65)	SPTSTPYPIQQGYNPY....PDTFLKE
  174-  198 (40.16/10.22)	.PSNYQYPGFQQYNT.GGNITRPMLRQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      71.99|      15|      42|     242|     256|       3
---------------------------------------------------------------------------
  242-  256 (25.26/16.73)	LNNLSTMIWEDEDTI
  262-  276 (23.05/14.65)	VNGITVLRRDDNNMI
  281-  295 (23.69/15.25)	LLNVTKMTRGRRDRI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.14|      32|     149|     200|     235|       4
---------------------------------------------------------------------------
  200-  235 (49.26/36.97)	SANAIYSSTTTPMYPysgGNGSSSSgGSFKNGENSE
  354-  385 (56.89/30.11)	SAGGVGVSPAGVMQP...GLGLSSA.TVVEYGEDSE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24766 with Med15 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FNYNSIQYLNQTGGELRRDSNNGDETNNTSNIMNYQYPGGNELISRQYRAPVSLPASGGVGVAPHQQALPTTALQNPPQYTNNYTQTSNIQYYYPTNAMQQQQQQQQQQQQQQQQQQQQAINGIPSYPYGTNIPKSISPTSTPYPIQQGYNPYPDTFLKESS
2) QRASAGGVGVSPAGVMQPGLGLSSATVVEYGEDSEHTNVDNDNNETNHSHNNTNNININHNNNHNHNHNQTNTNNNHNHTNNHTNTNTNTNTNTNTNTNTNNTNHNTNTNINHNHNHNTNHNHNSSSTSTSTHTHTHTHTHADTSQKDIDRTAYTTVSQQHPIQLPPPPEPHY
6
351
167
523










Molecular Recognition Features






MoRF SequenceStartStop




1) NIQYYYP
94
100