<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24750

Description Predicted protein
SequenceMAKASRSFIGLHKVPACFLLYGARVMSSVFVIANYLVVYCTFEPSNVPAGSVFGGTTFRQPVFGSAQPAPTTPVLGNSGEVFGSRQTDTFGAGLEKGNFNLKSSQETQGKGVFGFNISTASTEIPRSTFTQASSVQRLFGTSQDDAGVGVFSGNAPGNFSATFTPISTTSSVFGASSSKGRSFSFGQPKEIKQAAPFGFPITPTIESSKEHNVFGAATVSRGPSVFGANPFGKSNPPLKRTSPHNKSGNQQTSPTTDISALKGLVIREIPEAFNKNPWLKRFYSRFGEVAKIICYPRKKSASVIFKTHAAAEQAKRKGTVLLPGTAPVSIFWKQDKKRSRTGRTSAVCFSVIAVNRVLTTLEILDKYDFTRADNTNCIDLLYAKIFTSASKGNREFKNYKLDQSNVASEEGKQMVTKGLMVVGNIYIREKFQMNCSGGMHLITSHQVFYLFVPPSGGAKRVLRNLSSLPTALSAGDRFRILDMIDKKIRQGVKKATDISTAKAVKGACPDMCPEKERYMREDRRRLHVFETVPGSYSMEENPKVNHSKAIKEYDRSAADKGYITSPSHQQSMVWVDIQNVPIIACPFFRTSPCRMSSALSQCSR
Length604
PositionKinase
OrganismNematostella vectensis (Starlet sea anemone)
KingdomMetazoa
LineageEukaryota> Metazoa> Cnidaria> Anthozoa> Hexacorallia> Actiniaria> Edwardsiidae> Nematostella.
Aromaticity0.10
Grand average of hydropathy-0.297
Instability index50.42
Isoelectric point9.88
Molecular weight65934.52
Publications
PubMed=17615350

Function

Annotated function 
GO - Cellular Component
cytoplasm	GO:0005737	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central
transcription export complex 2	GO:0070390	IBA:GO_Central

GO - Biological Function
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
mRNA export from nucleus	GO:0006406	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24750
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     198.46|      39|      40|     159|     197|       1
---------------------------------------------------------------------------
   41-   70 (32.13/10.78)	.......TFEPSNvPA..GS....VFGGTT.FR.QPV.FGSAQPAP.......
   79-  113 (47.09/18.65)	.G....EVFG..S.RQ..TD....TFGAGL.EK.G.N.FNLKSSQETQGKGVF
  121-  157 (24.62/ 6.83)	STeiprSTFTQAS.SV..QR....LFGTSQ.DDaGVGvFSGNAPG........
  159-  197 (69.52/30.45)	FS....ATFTPIS.TT..SS....VFGASS.SK.GRS.FSFGQPKEIKQAAPF
  200-  231 (25.10/ 7.08)	..........PIT.PTieSSkehnVFGAATvSR.GPS.V.FG.......ANPF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     147.96|      49|      52|     243|     294|       2
---------------------------------------------------------------------------
  243-  294 (79.95/71.93)	PHNKSGNQ..QTSPTTDISALKGLVIreIP.EAFNKNPWLK.RFYSRFGEVAkIIC
  296-  348 (68.01/49.62)	PRKKSASVifKTHAAAEQAKRKGTVL..LPgTAPVSIFWKQdKKRSRTGRTS.AVC
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24750 with Med12 domain of Kingdom Metazoa
Unable to open file!