<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24748

Description Predicted protein (Fragment)
SequenceMSQNNRRTSGSKFTGCPKASKIRQLEKDCRKMSQNNRRTSGSKFTGCTKASKIRQLESALDYAHRAIRSLNKEHRKLGIENDVLRSGLQDENRVLTEEQRNAELLLKKQDEGRKKAKLQELKLQKVFIQHLLNAVLEKCTAESQTCSPSTKSIGSECTTECAEADVQATSEVTVVSVETQTDAVPKRHQSRAVRAWQSFCGQGKDCRKMSQNNRRTSGSKFTGCPKASKIRQLESALDYAHRAIRSLNKELRKLGIENDVLRSGLQDENRVLTEEQRNAELLLKKQDEGRKKAKLQELKLQKVFIQHLLNAVLEKVLATSAPALAERMEKDLGSSCGKLQEEREAFVSQIAEQTKSNAAKDALLAELKRQIGQTKTRPHCTAESQTCSPSTKSIGSECTTECAEADVQATCEVTVVVLTEEQRNAELLLKKQDEGRKKAKLQELKLQKVFIQHLLNAVLEKVLATSAPALAERMEKDLGSSCGKLQEEREAFVSQIAEQTKSNAAKDALLAELKRQIGTRPHCTAESQTCSPSTKSIGSECTTECAEADVQATSEVTVVSVETQTDAVPKRHQNRAVRAWQSFCGHGKDCRKMLQNNRRTSKSKFTGCPKASKIRQLESALDYAHRAIRSLNKDLRKLGIENDVLRSGLQDENRVLTEEQRNAELLLKKQDEGRKKARLQELKLQKVFIQHLLNARHQNRAVRAWQSFCGQESALDYAHRAIRSLNKDVRKLGIAPIHLYFKRVLTEEQRNVELLLKKQDEGRKKAKLQELKLQKVFIQHLLNAVLEKVLATSAPALAERKEKDLGSSCGKLQEEREAFVSQIAEQTKSNAAKDALLAELKRQIGQTKTRPHCTAESQTCSPSTESIGTECNNECAEADVQATSEVTVVSVETQTDAVPKRHQNRAVRAWQSFCGQGKDCRKMSQNNRRTSGSKFTGCPKASKIRQLESALDYAHRAIRSLNKELRKLGIENDVLRSGLQDENRVLTEEQRNAELLLKKQDEGRKKAKLQELEKTVEKCRKTTGGQVDPSLPDARKESALDYAHRAIRSLNKDLRKLGIENDVLRSGLQDENRVLTEEQRNAELLFKKQDEGRKKAKLQELKLQKVFIQHLLNAVLEKVLATSAPALAERKEKDLGSTCGKLKEEREAFVSQIAEQTKSNAAKDALLAELKRQIGQTKTRPHVLATSAPALAERKEKDPGSSCGKLQEEREAFVSQIAEQTKSNAAKDALLAELKRQIGQTKTRPHCTAESQTCSPSTKSIGSKCTTECSEADVQATSEVTVVSVETQTDAVPKRHQNRAVRAWQSFCGQ
Length1310
PositionMiddle
OrganismNematostella vectensis (Starlet sea anemone)
KingdomMetazoa
LineageEukaryota> Metazoa> Cnidaria> Anthozoa> Hexacorallia> Actiniaria> Edwardsiidae> Nematostella.
Aromaticity0.03
Grand average of hydropathy-0.773
Instability index59.66
Isoelectric point9.37
Molecular weight146469.86
Publications
PubMed=17615350

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24748
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            12|    1977.46|     148|     176|      80|     227|       1
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   27-  202 (314.32/208.21)	.KDCRK..MSQNNRRTSGSKFTGCTKAskirqlesaldyahrairslnkehrklgiENDVL..RSGLQDE......NRVL..TEEQRNA...ELLLKKQDEGRKKAKLQELKLQKVFIQHLLNAVLEKC..TAES..QTCSPS.....TKSIGSECT..TECAEADVQA.TSEVTVVSVETQTDAVPKRHQSRAVRAWQSFCGQ
  203-  338 (202.06/130.64)	GKDCRK..MSQNNRRTSGSKFTGCPKAskirqlesaldyahrairslnkelrklgiENDVL..RSGLQDE......NRVL..TEEQRNA...ELLLKKQDEGRKKAKLQELKLQKVFIQHLLNAVLEKV..LA.....TSAPAlaermEKDLGSSC..............................................GK
  341-  415 (105.66/64.02)	....................................................................................EEREAfvsQIAEQTKSNAAKDALLAELKRQ...IGQ..TKTRPHC..TAES..QTCSPS.....TKSIGSECT..TECAEADVQA.TCEVTV............................
  417-  495 (93.84/55.86)	..............................................................................VL..TEEQRNA...ELLLKKQDEGRKKAKLQELKLQKVFIQHLLNAVLEKV..LA.....TSAPAlaermEKDLGSSCGklQEEREAFVSQ...................................
  496-  586 (173.21/110.70)	.......................................................................................IA...E...QTKSNAAKDALLAELKRQIGTRPH........C..TAES..QTCSPS.....TKSIGSECT..TECAEADVQA.TSEVTVVSVETQTDAVPKRHQNRAVRAWQSFCGH
  587-  711 (204.11/132.06)	GKDCRK..MLQNNRRTSKSKFTGCPKAskirqlesaldyahrairslnkdlrklgiENDVL..RSGLQDE......NRVL..TEEQRNA...ELLLKKQDEGRKKARLQELKLQKVFIQHLLNA................................................................RHQNRAVRAWQSFCGQ
  712-  811 (140.52/88.12)	.ESALD..YAHRAIRSLNKDVRKLGIA...........................................pihlyfKRVL..TEEQRNV...ELLLKKQDEGRKKAKLQELKLQKVFIQHLLNAVLEKV..LA...............................................TSAPALAERKE....KDLGSSCGK
  812-  916 (211.18/136.94)	LQEEREafVSQ............................................................................IA...E...QTKSNAAKDALLAELKRQ...IGQ..TKTRPHC..TAES..QTCSPS.....TESIGTECN..NECAEADVQA.TSEVTVVSVETQTDAVPKRHQNRAVRAWQSFCGQ
  917- 1062 (167.03/106.43)	GKDCRK..MSQNNRRTSGSKFTGCPKAskirqlesaldyahrairslnkelrklgiENDVL..RSGLQDE......NRVL..TEEQRNA...ELLLKKQDEGRKKAKLQELE..........KTV.EKCrkTTGG..QV.DPS.....LPDARKESA..LDYAHRAIRSlNKDLRKLGIEND......................
 1064- 1141 (131.07/81.59)	............................................................L..RSGLQDE......NRVL..TEEQRNA...ELLFKKQDEGRKKAKLQELKLQKVFIQHLLNAVLEKV..LATSapALAERK.....EKDLGSTC..............................................GK
 1142- 1186 (30.63/12.18)	LKEEREafVSQIAEQTKSNAAKDALLA..................................................................................ELKRQ...IGQ..TKTRPHV..LAT......................................................................
 1187- 1310 (203.83/131.86)	........................................................SAPALaeRKE.KDP......GSSCgkLQEEREAfvsQIAEQTKSNAAKDALLAELKRQ...IGQ..TKTRPHC..TAES..QTCSPS.....TKSIGSKCT..TECSEADVQA.TSEVTVVSVETQTDAVPKRHQNRAVRAWQSFCGQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     253.51|      28|     328|     612|     640|       2
---------------------------------------------------------------------------
   51-   78 (63.70/42.72)	SKIRQLESALDYAHRAIRSLNKEHRKLG
  228-  255 (63.49/42.53)	SKIRQLESALDYAHRAIRSLNKELRKLG
  612-  639 (62.84/41.98)	SKIRQLESALDYAHRAIRSLNKDLRKLG
  942-  969 (63.49/42.53)	SKIRQLESALDYAHRAIRSLNKELRKLG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24748 with Med7 domain of Kingdom Metazoa
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