<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24743

Description Predicted protein
SequenceMSQNNRRTSGSKFTGCPKASKIRQLESALDYAHRAIRSLNKDLRKLGIAPIHLYFERVLTEEQRNAELLLKKQDEGRKKAKLQELKLQKVFIQHLLNAVLEKVLATSAPALAERKEKDLGSSCGKLQEEREAFVSQIAEQTKSNAAKDALLAELKRQIGQTKTRPHCTAESQTCSPSTKSIGTECTTECAEADVQATSEVTVVSVETQTDAVPKRHQNRAVRTWQSFCGQGKDCRKMSQNNRRTSGSKFTGCPKASKIRQLESALDYAHRAIRSLNKEHRKLGIENDVLRSGLQDENRVLTEEQRNAELLLKKQDEGRKKAKLQELKLQKVFIQHLLNAVLEKVLATSAPALAERRHLFHKLQSKRRAMPQKMLGQDEDEDIYGGYNEYDPAFDTEGKDCRKMSQNNRRTSGSKFTGCPKASKIRQLESALDYAHRAIRSLNKEHRKLGIENDVLRSGLQDENRFDTEIHK
Length471
PositionMiddle
OrganismNematostella vectensis (Starlet sea anemone)
KingdomMetazoa
LineageEukaryota> Metazoa> Cnidaria> Anthozoa> Hexacorallia> Actiniaria> Edwardsiidae> Nematostella.
Aromaticity0.04
Grand average of hydropathy-0.870
Instability index65.58
Isoelectric point9.58
Molecular weight53396.08
Publications
PubMed=17615350

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24743
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     449.96|      76|     164|     227|     302|       1
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    1-   61 (120.34/80.90)	..........MSQNNRRTSGSKFTGCPKASKIRQLESALDYAHRAIRSLNKDLRKLGIAPIHLYF.....ERVLTE
  227-  302 (166.30/114.62)	FCGQGKDCRKMSQNNRRTSGSKFTGCPKASKIRQLESALDYAHRAIRSLNKEHRKLGIENDVLRSGLQDENRVLTE
  393-  468 (163.32/112.43)	FDTEGKDCRKMSQNNRRTSGSKFTGCPKASKIRQLESALDYAHRAIRSLNKEHRKLGIENDVLRSGLQDENRFDTE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     346.85|      79|     240|      62|     140|       2
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   62-  140 (138.81/90.23)	EQRNAELLLKKQDEGRKKAKLQELKLQKVFIQHLLNAVLEKVLATSAPALAERKEKDLGSSCGKLQEEREAFVSQIAEQ
  142-  201 (75.02/45.32)	...........KSNAAKDALLAELKRQIGQTKTRPHCTAES..QTCSPS.TKSIGTECTTECAEADVQATSEVT.....
  303-  376 (133.02/86.15)	EQRNAELLLKKQDEGRKKAKLQELKLQKVFIQHLLNAVLEKVLATSAPALAERRH.....LFHKLQSKRRAMPQKMLGQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24743 with Med7 domain of Kingdom Metazoa
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