<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24736

Description Predicted protein (Fragment)
SequenceRQVVQYILDRKACLLPAYFVINEIFKDFPEGKATPHWSLSKLLSDYVDSFRPLAHMVTVTGRPLLLPIIGHPSSSIGVWKLDPATLSFPMKGLLPYNKSLFKPQKNLLQYVIGQPYSREIICSMLGLNKQQKQRCLALEELLVDLIVIAMEKSEHDQSGLDDTACQLLWQHLSSHLIFFVLFQFASFPHMVLALYDKLQGRNLRQGRDHLMWVLLQFISGSIQKNPISDFKPVIKLFELLYPGNEPLPEPDINHADSIHSLAMACIWIHLSKKVIKT
Length277
PositionTail
OrganismNematostella vectensis (Starlet sea anemone)
KingdomMetazoa
LineageEukaryota> Metazoa> Cnidaria> Anthozoa> Hexacorallia> Actiniaria> Edwardsiidae> Nematostella.
Aromaticity0.10
Grand average of hydropathy0.071
Instability index39.68
Isoelectric point8.72
Molecular weight31668.89
Publications
PubMed=17615350

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of gene expression	GO:0010628	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24736
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.74|      12|      97|     164|     177|       1
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  164-  177 (20.45/15.39)	ACqlLWQHLSSHLI
  264-  275 (24.28/12.23)	AC..IWIHLSKKVI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     129.34|      41|     144|      61|     106|       2
---------------------------------------------------------------------------
   61-  106 (65.45/52.47)	GRP....LLLPIIghpSSSI...GVWKLDPATLSFPMkgLLPYNKSLFKPQKN
  206-  253 (63.89/36.80)	GRDhlmwVLLQFI...SGSIqknPISDFKPVIKLFEL..LYPGNEPLPEPDIN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24736 with Med23 domain of Kingdom Metazoa
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