<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24734

Description Predicted protein
SequenceMVVADSHGEHEVVFVVEGTANLLLHFETLKTEYIDPIIEYINGGPVQESNSFFGDENGPNQYCLVVYGTKASHPEDAVQLVRYTRDVHDFLQALNEVKFDGGGGQDCSLLAEGMGFALQAFDEMRVSRGSVNCHRHCIVVCNSPPFPQPSRECLSYLNKTVDQLAAIMAKPENNIHLSIISPRKFPALQLVFDKSLRDDTKGMKSKTDYAKEPQHMACLQGIMLPGASSSSPLHTSLSGSSSGSATHSHQETDAANTAVNSPQTIPDAEPAPKKKTKPKPKQQPQSEPSFHSQLPQVSQPGQSMAGQPMKPIPGQALPGQAIPGMQGPYQVQPPQGVSPGMPGFPGANVSLGSNMPTMPAGTTTVNFQQQVRPQVPMQSVPDTGVPPAISKNSLAWSGTLEWYETTRTDLTTPTRITRSLQCHISVAPQNAIKTDKWPSKLIMQLIPQHLLSTLGRLLQNCKTVAFHFPATDPDSLKALYGVMAMRGVKFAGCVHFPPVPGCEIKVLLLIYSPKKRAFVGLIPHDQGNFVNGIRTVLAKYKTDQVKKFQMQRQQQLLAAQIRQQQQSGFNQQGGFAPAAGGVAGTVMPQNQFPQQAGVMQPGNAQATIPNTQRDQTTMLSSAALMPAASSQARDSIVTSSMGMQQLGPTASMPVSLATQPIQMNQQESMQRPLQQVYQNNLEAQRELALKQQQQQQQLQQQQQLQQQQLQQQPSQQLQQQQQLLQQLQFRKQLQLQQQQQQQFQVQQQTQQQSQAHSQLRHILQQVHQQAGGQPGAAANAQQAMTPQQWQVRQQLMTAAAQIPQMNTAQLSQSQGQMSQAQATQAQLNVQALQAQAAQSQGNFNPENMSLMELLQ
Length855
PositionUnknown
OrganismNematostella vectensis (Starlet sea anemone)
KingdomMetazoa
LineageEukaryota> Metazoa> Cnidaria> Anthozoa> Hexacorallia> Actiniaria> Edwardsiidae> Nematostella.
Aromaticity0.05
Grand average of hydropathy-0.524
Instability index60.49
Isoelectric point8.80
Molecular weight93681.12
Publications
PubMed=17615350

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24734
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     216.84|      43|      43|     670|     712|       1
---------------------------------------------------------------------------
  282-  323 (33.59/ 6.17)	........QQPQSEP...S..FHSQ..................LpqvsqpgqsmagQP.MKP.IPGQALPGQ...AIP
  549-  611 (44.31/10.72)	QMQRQQQLLAAQIRQQQ.QsgFNQQggfapaaggvagtvmpqnQ............FP.QQAgVMQPG.NAQATIPNT
  657-  690 (40.54/ 9.12)	.ATQPIQMNQQES.............................mQ............RP.LQQ.VYQNNLEAQRELALK
  736-  777 (56.95/16.09)	QQQQQQQFQVQQQTQQQsQ..AHSQ..................L............RHiLQQ.VHQQA.GGQPGAA..
  778-  813 (41.45/ 9.50)	.ANAQQAMTP....QQW.Q..VRQQ.................lM............TA.AAQ.IPQMN.TAQ..LSQS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.55|      16|      24|     691|     709|       2
---------------------------------------------------------------------------
  691-  706 (32.25/ 6.83)	QQQQQQQLQQQQQLQQ
  710-  725 (32.29/12.68)	QQQPSQQLQQQQQLLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      94.38|      23|      25|     447|     469|       3
---------------------------------------------------------------------------
  447-  466 (28.59/14.08)	......PQHLLSTLGRLLQNCKTVAF
  467-  490 (31.67/16.33)	HFPatdPDSLKALYG..VMAMRGVKF
  495-  518 (34.12/18.11)	HFP.pvPGCEIKVL.LLIYSPKKRAF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      64.52|      12|      38|     295|     306|       4
---------------------------------------------------------------------------
  295-  306 (25.23/10.81)	PQVSQPGQSMAG
  373-  382 (20.26/ 7.27)	PQV..PMQSVPD
  387-  398 (19.03/ 6.40)	PAISKNSLAWSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.58|      15|      92|       5|      30|       5
---------------------------------------------------------------------------
    5-   19 (27.12/36.88)	DSHGEHEVVFVVEGT
   55-   69 (29.46/12.54)	DENGPNQYCLVVYGT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.51|      12|      24|      91|     102|       6
---------------------------------------------------------------------------
   91-  102 (20.98/14.24)	LQALNEVKFDGG
  118-  129 (21.53/14.79)	LQAFDEMRVSRG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24734 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HSQLRHILQQVHQQAGGQPGAAANAQQAMTPQQW
2) NQFPQQAGVMQPGNAQATIPNTQRDQTTMLSSAALMPAASSQARDSIVTSSMGMQQLGPTASMPVSLATQPIQMNQQESMQRPLQQVYQNNL
3) SSSSPLHTSLSGSSSGSATHSHQETDAANTAVNSPQTIPDAEPAPKKKTKPKPKQQPQSEPSFHSQLPQVSQPGQSMAGQPMKPIPGQALPGQAIPGMQGPYQVQPPQGVSPGMPGFPGANVSLGSNMPTMPAGTTTVNFQQQVRPQVPMQSVPDTGVPPAIS
756
590
228
789
681
390










Molecular Recognition Features






MoRF SequenceStartStop




NANANA