<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24726

Description Predicted protein
SequenceMTTSSCVFNGADLDDCCSNVFALTDLCGLKWKKFVHAGHKLPLLCVLDDPILSSFSAALAQDILCSWRSISPPSHKPRPGTTKFTSSKEFWVFWYGDEPNLTGIVSSQLKASTQGCWEDGLPHEPRCMLFKALHNLLERCLLSKRFVRFGKWFLKPNEKDNAKSEPSDHLSFSFSFFVHGESSVCAAVEIQQHPQFRALTLDDLACAATKPEGLQGQCQAVSCKVSS
Length227
PositionMiddle
OrganismNematostella vectensis (Starlet sea anemone)
KingdomMetazoa
LineageEukaryota> Metazoa> Cnidaria> Anthozoa> Hexacorallia> Actiniaria> Edwardsiidae> Nematostella.
Aromaticity0.10
Grand average of hydropathy-0.137
Instability index38.69
Isoelectric point7.04
Molecular weight25179.57
Publications
PubMed=17615350

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IBA:GO_Central
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
sugar transmembrane transporter activity	GO:0051119	IBA:GO_Central

GO - Biological Process
carbohydrate transport	GO:0008643	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24726
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.56|      32|      36|       6|      40|       1
---------------------------------------------------------------------------
    6-   40 (51.92/33.86)	CVFNGADLDDcCSNVFALTDLCGlkWKKFVHAGHK
   45-   76 (58.64/28.71)	CVLDDPILSS.FSAALAQDILCS..WRSISPPSHK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.65|      10|      18|      79|      88|       2
---------------------------------------------------------------------------
   79-   88 (18.06/11.04)	PGTTKFTSSK
   99-  108 (17.59/10.60)	PNLTGIVSSQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24726 with Med13 domain of Kingdom Metazoa
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