<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24720

Description Predicted protein (Fragment)
SequenceYVDQFVLSQTLAKSLAQVCTKKLSTLYLAAEQMQSEQPPNQATKPQTNNSFPTALSTNGSNDSSFTPVTSSSSTSTVLSQYKNCSQHNSLVLALGAIIQAVTICCPGALVWNSTVCSSGQSSSSNNSGDQTKPQVLGSPLDRLPMAPSALPMPGGGNNNPINQEVMLSLLASEESVKTRGLAVESRWSPDKYQDKTSAVCFSVIAVNRVLTTLEILDKYDFTRADNTNCIDLLYAKIFTSASKGNREVNITCVFWYLKLLPPHLINMLESSSSVSSSNINFSLRITSWLTSTDEAIALLLCEWAISKHRVGKHRAFVVAKLLQRRQSDLLNKKDDSTSGGEESNSSRHNPIATPVCQKVLLEFLDNYAPVVESYQHSKGDPSFAQLVLLFVELVRHDVFSHNAYLCTLISRGDLQPTPAVSIPSPPRQIGETPLPLPVMSDIEECVQEGDAHGVPGMDVPMSTHEDVLRKDLSSELELDRELTLHQEQLERLLDQGDAEGCLDPDQAQSLHMAVSGVQGIQTDPGLQFYSSTTELSSSHDVKESISIEAASHSYNSKSQHLQYATHFPIPHEAATTHECNQRLVLLYGVGKARTEAINKSKEVTKLLVKTLYDLAGSGHGSVGGGEYSQCLTTSELSERRAKEEQWTSLYSKFSSLPCFDQYMAVAECANALRDLRMSNPPMFGLTSRLPSIDQLVFLYDLYELSGDIHGLLEFIAFVLMPDGDDYAQIQIIQNTSVIGTLPTKSIVTIAMLRRYHSCLVLMPDHIARVFKGLLQTVENIADPAVCTSSERCILAYLHDIYAPQGQLGVKFAEIFSTAHQKIKDSICSTTKPSATTAQYDSKFMTEYFQNPRTKRLDGIWDHLRMHKRPSDVYSFVCNAMMNVCNCQNSERLYDIAVLCAEVTAHYSRLSSEWLGILKALCCSSSSAACFVDFLLEVDVSDLSIHESVATFTALMIARHCFSLEDVIYHVALPSLLAALPSDFLDKPFEYKNTAEKSLMVREVSLDPN
Length1008
PositionKinase
OrganismNematostella vectensis (Starlet sea anemone)
KingdomMetazoa
LineageEukaryota> Metazoa> Cnidaria> Anthozoa> Hexacorallia> Actiniaria> Edwardsiidae> Nematostella.
Aromaticity0.07
Grand average of hydropathy-0.145
Instability index49.25
Isoelectric point5.46
Molecular weight111090.79
Publications
PubMed=17615350

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coactivator activity	GO:0003713	IBA:GO_Central

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24720
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.46|      15|      39|      75|      89|       1
---------------------------------------------------------------------------
   75-   89 (28.48/13.89)	STVLSQYKNCSQHNS
  113-  127 (26.98/12.83)	STVCSSGQSSSSNNS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.83|      24|      32|     230|     255|       2
---------------------------------------------------------------------------
  230-  255 (37.91/35.20)	IDLLYAKIFTSASKGNREVNITCvfW
  265-  288 (40.92/29.93)	INMLESSSSVSSSNINFSLRITS..W
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     218.40|      77|     282|     128|     229|       3
---------------------------------------------------------------------------
  128-  229 (103.44/113.62)	GD.QTKPQVlGSPLDRLPMAPSALPMPgggnnnpinqeVMLSLlasEESVKtRGLA..VESRWSP.....DKYQDKTSavcfSVIAVNRVLT....TLE.ILDKydftrADNTNC
  412-  501 (114.96/67.64)	GDlQPTPAV.SIPSPPRQIGETPLPLP...........VMSDI...EECVQ.EGDAhgVPGMDVPmstheDVLRKDLS....SELELDRELTlhqeQLErLLDQ.....GDAEGC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.20|      10|      87|     611|     620|       7
---------------------------------------------------------------------------
  611-  620 (20.21/15.10)	LYDLAGSGHG
  701-  710 (19.99/14.84)	LYELSGDIHG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.82|      13|     276|      56|      68|       8
---------------------------------------------------------------------------
   56-   68 (24.88/14.07)	STNG...SNDSSFTPV
  336-  351 (19.95/ 9.86)	STSGgeeSNSSRHNPI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.26|      17|     276|     645|     663|       9
---------------------------------------------------------------------------
  645-  661 (32.90/20.35)	QWTSLYSKFSSLPCFDQ
  678-  694 (31.37/12.39)	SNPPMFGLTSRLPSIDQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24720 with Med12 domain of Kingdom Metazoa
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