<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24693

Description Uncharacterized protein
SequenceMVCFMQGRTAYVSQVQPKEQPILVWDIKVKFRVIDRYKVIGFISSGTYGRVIKPLAEMDGRGIRHQEIQTDRKVNKFNILVFSHSAGGFMALCSELSHMNVIRLVEIILEDKCIFMVFEYAEHDLLQIIHHHTQPTRHPIPAPTVKSIMFQLLNGCQYLHANWVLHRDLKPANIMVSSSGEVKIGDLGLARLFNKPLHALFSGDKVVVTIWYRAPELLLGSKHYTPAIDMWAVGCIFAELLSLRPIFKGEEAKMDSKKTVPFQRNQMQKIVDIMGLPTKEKWPHLVSMPEYSQLSTLSASGHAKAGYSSLEKWYYQTINSSSTSVPVSNSSLGAEGYKLLSSLLEYDPEKRLTAQAALTHPFFSTGDKVSANVFEGVKTEYPHRRVSQDDNDIRTGSLPGTKRSGLPDDSRPAKRLKE
Length418
PositionKinase
OrganismSclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) (White mold) (Whetzelinia sclerotiorum)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Leotiomycetes> Helotiales> Sclerotiniaceae> Sclerotinia.
Aromaticity0.09
Grand average of hydropathy-0.225
Instability index36.11
Isoelectric point9.19
Molecular weight47157.99
Publications
PubMed=21876677

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
cyclin-dependent protein serine/threonine kinase activity	GO:0004693	IBA:GO_Central
RNA polymerase II CTD heptapeptide repeat kinase activity	GO:0008353	IBA:GO_Central

GO - Biological Process
protein phosphorylation	GO:0006468	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24693
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.80|      27|      28|     280|     307|       1
---------------------------------------------------------------------------
  280-  307 (43.93/30.83)	EKWpHLVSMPEYSQLSTLSASGHAKAGY
  311-  337 (47.86/28.59)	EKW.YYQTINSSSTSVPVSNSSLGAEGY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     126.69|      38|      90|     111|     153|       3
---------------------------------------------------------------------------
  111-  153 (56.76/59.01)	DKCIFMVFeYAEHDLLQIIHHHTqPTrhpIPAPTVKSIMFQLL
  204-  241 (69.93/49.82)	DKVVVTIW.YRAPELLLGSKHYT.PA...IDMWAVGCIFAELL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24693 with CDK8 domain of Kingdom Fungi
Unable to open file!