<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24679
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MDATTIYDLYDLAELGLGGAAPTIKGLPQRIDELRLSGCSQKVAWSKLGAIAYVSPDGQKVLLRYLHCSPIDGKWTLSEESPINQIADIHGGHAMVHLLWNESGSELAIVDSCGRISVVTIMMALNTVNPTRQASMDADDDWSQPVGLMWLNLNRPLFGFHKATRANDRWNYPAYRRRPLGPLHPANKPGLVVVTKSGHIKLIYQNPDSRWAEISTELKAVGYLDGLLTHAALAPAEGNGISIAAYSTYGKLYFYRIQVKWDPPEWDLTMKPGGGPVAFPTPAFQILHTKTEILSAIFHPQAHDVDYITGFPSPNGSIYNLTHLEIITAPQAVPGTQAATGPCIIAVASIPAQSQLGQPPPSGPSSILVRWQLDTMAQSLHPNFDNVVSKNTASSPKPKIIFRKLDDIYFDRYVVSIDYMEAGSVLAITQDDSSISFFEARSMRPITENEDDNIVTSMPNAGFTFPIDASAALALGYVRACGSDASADDILTVIVRQLNPGAETFVTEVYSILFMSVDFTEHDKLVNHQSIQKGLTMQAMLGFRSRFQPRTSSSAVSWIILNIRQIMVLLLTFSHYLKSGRDFTPSEPEALHMILGNIKWILDLAKYLVNDLFEIEDTIPPDRNLFSLPSKTYESPSLILVLSSVPRSFLRHIFRYLSRFPLAFKAASNLSGESYQLFASINNTIEQSSLKPDVCEKMLTHIDSLVTRSYEAAGFGNAERNAPEREMLITCSIPPVLQPAVMSILTETMPLIVRSEVDRMALALYDYSWLGIGDDKRTELFKRTHDVDILKKNVNKLPDPTVAKRRCVRCCEVSEDTWLPRSASMYRLIGKIGVLRTCVCGGTFAMENVEALDRLPLPVYR |
Length | 861 |
Position | Tail |
Organism | Ajellomyces capsulatus (strain NAm1 / WU24) (Darling's disease fungus) (Histoplasma capsulatum) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes>
Eurotiomycetidae> Onygenales> Ajellomycetaceae> Histoplasma.
|
Aromaticity | 0.09 |
Grand average of hydropathy | -0.062 |
Instability index | 50.12 |
Isoelectric point | 6.08 |
Molecular weight | 95486.52 |
Publications | PubMed=19717792
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP24679
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 444.33| 147| 163| 392| 550| 1
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383- 541 (227.46/190.13) NFDNVVSKNTASSPKPKIIF..RKLDDIY..FDRYVVSI.DYM..EAGSVLAITQDDSSISFFEARSMRPITENED....DNIVTSMPNAGFTFPidaSAALALGYVracgSDAsaddILTVIVRQLN..P....GAETFVTEVYSiLFMSVDFTEHDKLVNHQSIQKGLTMQAML
542- 705 (216.87/150.54) GFRSRFQPRTSSSAVSWIILniRQIMVLLltFSHYLKSGrDFTpsEPEALHMILGNIKWILDLAKYLVNDLFEIEDtippDRNLFSLPSKTYESP...SLILVLSSV....PRS....FLRHIFRYLSrfPlafkAASNLSGESYQ.LFASINNTIEQSSLKPDVCEKMLTHIDSL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 84.23| 29| 48| 183| 211| 2
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167- 207 (44.45/28.49) NDRW.........nypayrrrplgpLHPANKPGLVVVTKSGHIKLIYQNP
208- 257 (39.78/24.72) DSRWaeistelkavgyldgllthaaLAPAEGNGISIAAYSTYGKLYFYRI
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 88.93| 25| 48| 310| 334| 4
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310- 334 (45.80/25.72) GFPSPNGSIYNLTHLEIITAPQAV.P
357- 382 (43.12/23.81) GQPPPSGPSSILVRWQLDTMAQSLhP
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