<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24666
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MEVINKYLGQGTTPLISWSKIGFIVYVPPTRTAQHNLLLTFLENVDGKTWRLAKPQPIDIKCDNKYLPEISLVSWSTLSTDLAVSDVYGNFYILLAGVGLLESKDPSPSYELTSYNHMEMIYRDVINQDMSSPVNPEASIVAFKWLNIEKPQILNKPAALVAPQDHQLASSSSAAAAAAGSSATTNNSTSSSMYAYGVNQYAPHGLSHPIATKQACVALRRSGAFMLYYQGEHKVEYHKTMVNLNGLQPLQLQLQLLPLMLHAHIPMMIDKAAIGFTNDKEIIISAWDSLTNTIFTYLVTIDWGFLTESAKRQKTDPHFHTPKESQKPPTMHLKLIHQMTPEQGLTSIDIISANPEKSSQASILWTYGTTVYRYQITDTANLIHEAFVELGRRQGVTGELRSVKTIDLVDKITRLDPIQSIASGPSDMYAVIYYRNGKIEILDAVEWEPVGSKEYPPTTISTMFDLGYGFPSVGKEEQDHTTKNQNQNQNQNQNQLMMAVSPNLTSIVYTEIYGADENSHLILKTAEKVRNVGVSPKELLITSAGFAYRHAYACYSNTCSDDLVLLIEAEIDRVKQTLSKQMPDKQENVNLIVKKFIETIISESHRSINFQLDAFSKESVDKLLSNPPLQKLLSLQHILGEAQGNTVMSDIAWLILNLRSTNFGIMFTLSSIYRQISKKKPSEDTMQDSITRGECILSLIGNIKWLIDLMAYFNQELMQLTYFKNDSRSELDLSNSIVLPVILSKVPRLFLMYAISSMGKTHEILKKLHKDLAESNKLFKPMKESLNRYFTIFNNAPLTLNLFENYLRECDALVTKEMATKGSLKIEQSLVFGIIPSEVQDLAKTLVERYSISIARESKVPDLFFYDTEWLNLGNESKNKNINNQLGNNIVYNNGVDALRKVNIFDKVRRCTRCRSVSLVTDPLVFEAPSTIGLWTMVFQRTCICGNAWVNEV |
Length | 953 |
Position | Tail |
Organism | Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) (Yeast) (Saccharomyces elongisporus) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes>
Saccharomycetales> Debaryomycetaceae> Candida/Lodderomyces clade>
Lodderomyces.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.190 |
Instability index | 44.74 |
Isoelectric point | 6.43 |
Molecular weight | 107300.81 |
Publications | PubMed=19465905
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP24666
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 48.23| 13| 56| 5| 19| 1
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5- 19 (22.17/18.99) NKYLGQgtTPLISWS
64- 76 (26.06/14.91) NKYLPE..ISLVSWS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 258.11| 81| 497| 335| 435| 3
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166- 251 (130.83/78.50) HQLASSSSAAAAAAGSSATTNNSTSSSMYAYGVNQYAPHGLSHPIATKQACVAL.RRSGAfmlyyQGEHKVEYHKTMVN.LNGLQPLQ
337- 419 (127.28/112.37) HQMTPEQGLTSIDIISANPEKSSQASILWTYGTTVYRYQITDTANLIHEAFVELgRRQGV.....TGELRSVKTIDLVDkITRLDPIQ
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 33.50| 9| 111| 744| 753| 4
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744- 753 (14.16/14.40) SKVPRLFLmY
858- 866 (19.34/12.83) SKVPDLFF.Y
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 189.22| 59| 164| 272| 333| 6
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272- 333 (95.85/83.48) AAIGFTNDKEIIISA..WDSLTN......TIFTyLVTIDWGFltESAKRQKTDPHFHTPKESQKPPTMHL
430- 496 (93.37/68.98) AVIYYRNGKIEILDAveWEPVGSkeypptTIST.MFDLGYGF..PSVGKEEQDHTTKNQNQNQNQNQNQL
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