<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24655

Description Uncharacterized protein
SequenceMSHSSSPNRSSSIFGWAKSLKRSHLLSNDSVNEISDSDNASSKFSPTKLINAGAFPSIVPSSSMQQLQQQQQQQQQQQQQQQQQQQMPRLQPQRSPLNIPSNTNNNNNINNNSIPMSSSISGNLEPGAISPSPSNYIPLPSHQRQSILLHNNAQSGFSTSNYLGTSPTASSSTHDFLRPILNHKLRSTNNVSRVRSNSENSIRNHRDSFLQSNSLVDENSKYFGVPLQQALSEAAAKISVLSSDDQTSGLQYGEIPIVVAKCGVYLKKNGLTVEGIFRVGGSSKRLKELQVIFNTPPDYGKKLIWDGYTVHDAASILRRYLNALPEPLIPLDVYEEFRVVLKERPRIISYMKYKAENPTRSLRKKSEGDSSQMLTEANMGRHNDSHALSVNAESLSNARATPNTVPDSQAVPTSLTAQTAQTAQTAPASTITASLQQPTLLLSIPQSSQEDFSNKQKKKKTKNYKKLTNDVHTAIDIYRVLLNNLPISSKQLLFYILDLLAMVQSNLERNLMSARNLAAIFQPLILSHPNHDLDPEEYALSQLVVEFLIQYSYKLLPSHKEPSPPPPAPPIATSLDVNVSADEIGPQDSLSNSEATYEAQKGQLSVEETASGSSSSQVVQKQQQQQQQQQLTPRFQRQHSKSLSAAPQHEDIVMGFKHNATESIPGESDLEYEVSDGVGSDADELYFHEAHRPSTMSSPKTSPMELIGKPVIPAAEEDPVIVVTSPLSTSVDQKSE
Length736
PositionTail
OrganismLodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) (Yeast) (Saccharomyces elongisporus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Debaryomycetaceae> Candida/Lodderomyces clade> Lodderomyces.
Aromaticity0.05
Grand average of hydropathy-0.609
Instability index65.64
Isoelectric point6.57
Molecular weight81060.39
Publications
PubMed=19465905

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
signal transduction	GO:0007165	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24655
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     499.04|     118|     543|      28|     146|       1
---------------------------------------------------------------------------
   28-  143 (201.42/97.57)	.................NDSVNEISDSD...NASSKFSPTKLINAGAF...PSIVPSSSMQQLQQQQQQQQQQQQQQQQQQQM.PRLQPQ..RSPLNIP.SNTNNNNNINNN...SIPMSSSISGN....LEPGAISPSPSNYIPLPSHQ
  144-  229 (118.07/54.08)	RQ....................SILLHN...NAQSGFSTSNYL..GTS...PT.ASSSTHDFL.............................RPILNHKlRSTNNVSRVRSN...S...ENSIRNHrdsfLQSNSLVDENSKYFGVPLQQ
  391-  447 (52.12/19.68)	...............................NAES......LSNARAT...PNTVPDS..QAVPTSLTAQTAQTAQTAPASTItASLQQP..TLLLSIP.QS................................................
  561-  687 (127.43/58.97)	EPsppppappiatsldvNVSADEIGPQDslsNSEATYEAQK....GQLsveETASGSSSSQVV.......QKQQQQQQQQQLT.PRFQRQhsKSLSAAP.QHEDIVMGFKHNateSIPGESDLEYE....VSDGVGSDADELYF......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.93|      16|     163|     298|     325|       2
---------------------------------------------------------------------------
  310-  325 (29.28/12.27)	VHDAASILRRYLNALP
  471-  486 (29.64/16.35)	VHTAIDIYRVLLNNLP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24655 with Med15 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DEIGPQDSLSNSEATYEAQKGQLSVEETASGSSSSQVVQKQQQQQQQQQLTPRFQRQHSKSLSAAPQHEDIVMGFKHNATESIPGESDLEYEVSDGVGSDADELYFHEAHRPSTMSSPKTSPMELIGKPVIPAAEEDPVIVVTSPLSTSVDQKSE
2) LLSNDSVNEISDSDNASSKFSPTKLINAGAFPSIVPSSSMQQLQQQQQQQQQQQQQQQQQQQMPRLQPQRSPLNIPSNTNNNNNINNNSIPMSSSISGNLEPGAISPSPSNYIPLPSHQRQSILLHNNAQSGFSTSNYLGTSPTASSSTHDFLRPILN
3) PTRSLRKKSEGDSSQMLTEANMGRHNDSHALSVNAESLSNARATPNTVPDSQAVPTSLTAQTAQTA
582
25
358
736
182
423










Molecular Recognition Features






MoRF SequenceStartStop




1) ADELYFHEAHR
2) SSSIFGWAKSLKR
682
10
692
22