<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24645

Description Uncharacterized protein
SequenceMSKPKEIVNTKERRRSIALLTRPLSQSPYTQGIPLSQDASPRGSQSSSYVANAPFMRGPSSLSNRDHNLRSPSGVGLDKLDENNDSTIMDTSPSSASDITSQHPPSAIPLDRGDLNNGLDDPKLISKISKHLPSDFESLNQEGADITRDLYKIQQDAIEKPKLRRHKSCDSATSSLGLSRSRAGSFNVPGGFRREYLIHQHESQQQQQQQQQQQQQQQRLLSLSLHPRLRRTLMLSTHPSVFNNGANVYNNLKHFADDSFRTMTPNFLTRNFIEFLTMYGHFAGEELEDDDNIINHYKFNLSDEQTPLLASREQGEIPNYNPKGTATDRKAYFLLLKAFVGTGVLFLPRAFANGGLLFSIGTLVGFAILSWWCYLILVYSKITTRVSGFAEIGLKLYGPWMQKLILSSIVISQIGFVAAYIVFTSENLRAFIVNVSSFKTLELNIIWFIGFQVLLITPMSLVRDITKLSIVAVLANLFILTGLATILYFIFYEWLVLNDSQFGPNVEYFFNESEFSLFIGTAIFAFEGIGLIIPIQESMIHPLNFPKVLAQVITTIAITFIVIGTLGYVTFGEDVQTVILLNLPQTSPMVILTQFLYSLAILLLTPLQLFPAIRLIESKIFNFRSGKLSLGVKWLKNLFRTLFVLLTAYIAFIGGQNLDKFVSFVGCFACIPLVYMYPPMLHYRSCCKITPNLTDNEKRRRYWLGNLDFLLVLIGGVAMIYTTAQIVAT
Length729
PositionTail
OrganismLodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) (Yeast) (Saccharomyces elongisporus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Debaryomycetaceae> Candida/Lodderomyces clade> Lodderomyces.
Aromaticity0.11
Grand average of hydropathy0.093
Instability index46.09
Isoelectric point8.94
Molecular weight81985.80
Publications
PubMed=19465905

Function

Annotated function 
GO - Cellular Component
fungal-type vacuole membrane	GO:0000329	IEA:EnsemblFungi
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
vacuole-mitochondrion membrane contact site	GO:1990816	IEA:EnsemblFungi

GO - Biological Function
L-glutamine transmembrane transporter activity	GO:0015186	IEA:EnsemblFungi
L-isoleucine transmembrane transporter activity	GO:0015188	IEA:EnsemblFungi
L-tyrosine transmembrane transporter activity	GO:0005302	IEA:EnsemblFungi

GO - Biological Process
amino acid transmembrane export from vacuole	GO:0032974	IEA:EnsemblFungi









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24645
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      69.86|      14|      26|      93|     106|       1
---------------------------------------------------------------------------
   59-   73 (20.13/12.32)	PSSLSNRdHNLRSPS
   93-  106 (27.11/19.38)	PSSASDI.TSQHPPS
  122-  134 (22.62/14.84)	PKLISKI..SKHLPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      88.02|      22|      39|     332|     358|       2
---------------------------------------------------------------------------
  332-  356 (33.44/23.92)	YFLLLKAFVGTGVLflpRAFANGGL
  374-  394 (35.56/15.25)	YLILVYSKITTRV....SGFAEIGL
  518-  531 (19.02/ 6.82)	.......FIGTAIF....AFEGIGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.22|      24|      39|     180|     203|       3
---------------------------------------------------------------------------
  180-  203 (42.46/26.15)	RSRAGSFNVPGGFRREYLIHQHES
  217-  240 (40.76/24.82)	QQRLLSLSLHPRLRRTLMLSTHPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.15|      12|      39|     445|     456|       4
---------------------------------------------------------------------------
  445-  456 (22.21/12.85)	IIWFIGFQVLLI
  486-  497 (22.94/13.52)	ILYFIFYEWLVL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24645 with Med15 domain of Kingdom Fungi
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