<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24644
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MSDRVSWSKNGFIAYSGAGNSIHLTYLENINGREWQLAEPQKFKITGHDGSVAAGPLSAVSWSNLSTDLAVCDHQGSFYVLLAGVGVIDHDTNGTHNGVVNGQRNGSQKPSTAYELTSYNQLVVTYRDMVGERNEVVALKWLNVEKNQIIPKPAVLVQTANESSAAYQYGVSSHQPSGLSHPISSKQACVVLRRNGDLTLYYQGEHKVDYYKVSTKLEGTYITHGSLGLTKDKSLVVVSHNGLTGKISMHTIRIDWGFLAESALKQKTDPHYNTPESSKTPPKLSVEHSYDMLPQPFVVDATNEQSQDGYTLSSIDSISTSANSESNLDIFISYKSGNSTHLYQYEVGYADDVISPEFAELGRKKGIQENQKTCPKLILVSRAVRPGVLLSVQAAFSDIFVVFNYNDGRVDIMDRRKMDIIDPTKSEMPPHTVSSIFDVGFSFQTPGDKNIIPGMVAYSPTLTARVYAFPGEDSPRLHLQTVSKIDSVVNPKVLFLTSVGFAFCHSYACYSNICADDFIVMIQQDILRVTKILRKTHQEKSHHIEVVVTKFIESIICESHKAINFQLDAFGKESVDKLLSNPPLQKLLSLQMALGELQDHGKLISDLAWIVLNLRSTSFGIMFSLSSIYRQVSKKKPSEDTMQDSVARAECIVSLIGSVRWLIDLIIYLNQEFNQLANSKGDPSISKLTMKNSVVLPIVLSKVPRLFLMYALSSIQKTHETLKKLHKDLAESNKLFQPMKEALNRYFTTCANSPLQISLFESFLRDTDAVIAKEISQNPKFEKKGYQLRVEQKLVFQGEISEEYIPIATAVVGKYANNISLDMKVSELFFYDVDWIGVGIQWFNDECVVVEGSHEVLLQYPQEPKQMVPRLAYGTRDCIDALRKVVIPRGKGGAKVRKCTRCRSVSLVNDPLVFNAPTTLGLWTMVFQRSCICGSIWINTE |
Length | 941 |
Position | Tail |
Organism | Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) (Yeast) (Candida guilliermondii) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes>
Saccharomycetales> Debaryomycetaceae> Meyerozyma.
|
Aromaticity | 0.09 |
Grand average of hydropathy | -0.173 |
Instability index | 36.74 |
Isoelectric point | 7.32 |
Molecular weight | 104939.70 |
Publications | PubMed=19465905
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP24644
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 92.74| 28| 58| 415| 443| 1
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415- 443 (46.39/37.16) RRKMDIIDPTKSEMPPHtVSSIFDVGFSF
476- 503 (46.35/31.90) RLHLQTVSKIDSVVNPK.VLFLTSVGFAF
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 122.49| 39| 317| 3| 42| 2
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3- 42 (71.16/46.79) DRVSWSKNG......FIAYSgAGNSIHL.....TYLENIN.......GREWQLAEPQK
316- 372 (51.33/28.55) DSISTSANSesnldiFISYK.SGNSTHLyqyevGYADDVIspefaelGRKKGIQENQK
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 76.15| 23| 318| 451| 473| 6
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451- 473 (40.00/26.23) IIPGMVAYSPTLTARVYAFPGED
770- 792 (36.15/23.01) VIAKEISQNPKFEKKGYQLRVEQ
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 76.88| 25| 234| 575| 610| 8
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575- 610 (30.33/42.71) VDKLLSNpplqklLSLQMALGELqdhgkLISDLAWI
812- 836 (46.54/28.77) VGKYANN......ISLDMKVSEL.....FFYDVDWI
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