<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24614

Description Transcription regulatory protein GAL11
SequenceMNNMQQPQQGMSTWHSMYAVAEREKVVQFLTNALREMQGVNYDPQRGAAIAREFEKYTFMRSSSRDEYLRLIKQKIEQLRSSVRGVPGRPQQQQQQAQQQQQQQQQQQQQLPRQQLPQQNIPGAGNVARNQNQPMNAQNLNFLQQQAQARQQSAAQIQAQMRGNNMGQPNGQLPQPNGQQSHQQNQSQNQTQQQNQQQRQQQQQQQQQSNQVQQPAGANTPANLQQIQQIVKNSPIPNALLAKIPNLPPGVSTWNQVFDCLQKKIIPNSAVSIIKDIHNTHIHLVYRQQQQQKINQMQNQQRNQNQQSQVSQIPPQRQQQQQQPQQVMGASMSPNMGNANPNNAPNNARQQAQQQQQAQQQQQQQRNAMANGPQMMQQPQQTPLPAPMQSSPLQGHQQPMQSQQAQQQQQQNQPKAPDFPITPQDIMKYSPAAMTLLSRLRSNNTIVSDLDQSQKESFIRRYIQHQKAQQWKNEMAMRNNSNNSSNAGTAMNVGGSANNGSNFAAVPQNRLQQQQNQMKQQQPPAAPISEVPPQIPQQSPLIGNMPVNQAQMMKPQSQPQPQMNPMSSPVLNQRPASSMQMNNVNASFANNGPNNLNTVSQQPQQQQQSQQQATQASQQQSAAAFLPPLTDEMKQRLKSLIDEVSKDNVVLKDVSALLSPEDKSTVRESMIKISRHFANVDSIISYYFLLTSDANGTKRLIQMKYMTKNIMDNLHRGIYLAGPDLIEKLNSQYERHFGYVKQQFAIRRQQMQRSQQGNQQAPQPPAQAINRQAQFPQPQQPIAQPQPANLGPANNWPNVGLPPSQGSNGQQRGAISSSPLMPQSASPMMANNLKQTPKQIPPPVKKPSTSAVRRKGSTKGSVNGTSIPTPAGTAATPGSLANSIKTPNSIPTPHPATHSNKNTPTGQSPNYPVKNTPTGSGAPATDADIFINTKDDSKSAKRRDLSNSDPEKFFYASLANLLELEDSFVDIKDATLPRTPTLVNGKPTAKSPLSPAIHGGEWTCEIKPNAITSAFRQVDSIKELVSNDIIERCTNLAIEESDRRNVNGEVNGIEGSSNGGIKRSSEDDDLENLFVEKKARTAEEDYKYVYEPVSFDEWKQFVVSSIQ
Length1107
PositionTail
OrganismScheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) (Yeast) (Pichia stipitis)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Debaryomycetaceae> Scheffersomyces.
Aromaticity0.04
Grand average of hydropathy-1.014
Instability index68.97
Isoelectric point9.84
Molecular weight123472.17
Publications
PubMed=17334359

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24614
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     736.97|      89|      90|      89|     177|       1
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   89-  177 (168.13/41.52)	RPQQQ.....QQ..QAQQQQQQQQQQQQ..Q.....LP.....R..QQLPQ.QNI....PGA......GNV...ARNQ....NQPM.NA................QNLNFLQQQAQA........RQQSAAQIQAQMRGNNMGQPNGQLPQPN
  182-  286 (85.10/16.77)	HQQNQsqnqtQQ..QNQQQRQQQQQQQQ..Q.....SN.....Q..VQQPAgANT....PA........NL...QQIQqivkNSPIpNAllakipnlppgvstwnQVFDCLQKKIIP..........NSAVSIIKDIHNTHI.....HLV..Y
  287-  386 (114.90/25.65)	RQQQQ.....QKinQMQNQQRNQNQQSQvsQ.....IPpqrqqQ..QQQPQ.Q.V....MGAsmspnmGN....ANPN....NAPN.NA................RQQA..QQQQQA........QQQQQQQRNAMANGPQMMQQPQQTPLPA
  394-  486 (107.70/23.51)	QGHQQ.....PM..QSQQAQQQQQQNQP..K.....AP.....D..FPITP.QDImkysPAA......MTLlsrLRSN....NTIV.S..................DLDQSQKESFI........RRYIQHQ.KAQQWKNEMAMRNNSNNSSN
  506-  591 (106.61/23.18)	VPQNR.....LQ..Q..QQNQMKQQQPP..A.....AP.isevP..PQIPQ.QS.....PLI......GNM...PVNQ....AQMM.KP................QS....QPQPQMnpmsspvlNQRPASSMQ.......MNNVNASFAN.N
  599-  680 (69.07/11.99)	VSQQP.....QQ..QQQSQQQATQASQQ..QsaaafLP.....PltDEMKQ.RLK....SLI......DEV...SKDN....VVLK.DV................SALLSPEDKSTV........R.ESMIKISRHF..ANV...........
  741-  802 (85.47/16.88)	...KQ.....QF..AIRRQQMQRSQQGN..................QQAPQ........PPA......QAI...NR.Q....AQ.........................FPQP.............QQPIAQPQPANLGPANNWPNVGLP...
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      92.42|      22|      22|     849|     870|       2
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  840-  866 (32.43/17.13)	IPPPvkkpsTSAVRRKGSTKGSV.NGTS
  867-  889 (26.04/12.08)	IPTP...agTAAT..PGSLANSIkTPNS
  890-  913 (33.95/18.32)	IPTP..hpaTHS.NKNTPTGQSP.NYPV
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---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.50|      22|      36|     928|     950|       3
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  928-  950 (32.99/28.66)	DIFINTKdDSKSAKRRDLSNSDP
  966-  987 (38.51/27.82)	DSFVDIK.DATLPRTPTLVNGKP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24614 with Med15 domain of Kingdom Fungi
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