<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24598

Description Uncharacterized protein
SequenceMADRLDRWRELLRGAAGSAGICDVIENAILVAAADAPQELLRRRDRICEILFTAPRAPPCHHGCGSAATPTPATPVEEDKGSVRRVPEKQSKVDSSSNGALGGGGGRRDDVDDDSDSDSDDERLRRAAASNYGHNYDDDDEEEEEEQEAAPAEEDEEQELDPEAVELEALTNEIDEESQVVGEVLRIKDLFLHKEDHSDATLFESLRRLQLMQLSVSTLKATEIGRAVNGLRKHNSQQIRHLVRTLIEGWKILVDEWVSTTNVALTDNSPGSSKTSVVDDADDEGLPSPPLDEGAFFATQTTAIQLSEFFDEMDEDGNLRHNNDGSLGNKRENYGRRPTSHPALTKQEPSRNMGAVEKVQSRRPELARQEPSMRQANPQTPQNSSLQVKQQAMLHKQSKPLSSDSGPGRPLRAAPQQKPFVEMKSRLAREQVAVERKPAASHVDKSRLPAQPSAGVKLESAKPKIYDGLESNSRLEAAKRRLQERYQEAENAQILRVAPNFLTAPSTQRKGSAPYK
Length516
PositionUnknown
OrganismOryza sativa subsp. indica (Rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza> Oryza sativa.
Aromaticity0.03
Grand average of hydropathy-0.876
Instability index70.24
Isoelectric point5.11
Molecular weight57001.25
Publications
PubMed=15685292

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24598
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.92|      18|      20|     333|     350|       1
---------------------------------------------------------------------------
  333-  350 (34.85/21.74)	NYG...RRPTSHPALTKQEPS
  352-  372 (28.08/16.09)	NMGaveKVQSRRPELARQEPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      88.29|      20|      20|     137|     156|       2
---------------------------------------------------------------------------
  116-  136 (26.78/13.18)	DSDSDDERLRRAAASNyGHNY
  137-  156 (31.73/16.98)	DDDDEEEEEEQEAAPA.EEDE
  157-  176 (29.78/15.48)	EQELDPEAVELEALTN.EIDE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.66|      17|      20|     416|     435|       3
---------------------------------------------------------------------------
  418-  435 (25.09/22.45)	KP...FVEmKSRL.AREQVAVE
  437-  457 (21.57/ 7.09)	KPaasHVD.KSRLpAQPSAGVK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.75|      12|      21|      81|      97|       6
---------------------------------------------------------------------------
   81-   97 (14.76/16.80)	GSVRRvpekqSKVDSSS
  104-  115 (22.99/11.38)	GGGRR.....DDVDDDS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24598 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) PCHHGCGSAATPTPATPVEEDKGSVRRVPEKQSKVDSSSNGALGGGGGRRDDVDDDSDSDSDDERLRRAAASNYGHNYDDDDEEEEEEQEAAPAEEDEEQELDPEAVELEALTNEI
2) SEFFDEMDEDGNLRHNNDGSLGNKRENYGRRPTSHPALTKQEPSRNMGAVEKVQSRRPELARQEPSMRQANPQTPQNSSLQVKQQAMLHKQSKPLSSDSGPGRPLRAAPQQKPFVEMKSRLAREQVAVERKPAASHVDKSRLPAQPSAGVKLESAKPKIYDGLESNSRLEAAKRRLQERYQEAE
3) VALTDNSPGSSKTSVVDDADDEGLPSPPLDEGAFF
59
307
263
174
490
297










Molecular Recognition Features






MoRF SequenceStartStop




1) KLESAKPKIYDGL
2) QLSEFF
3) QVKQQAMLHKQSKPLS
4) RPLRAAPQQKPFVEMKSRLAREQVAV
457
305
387
409
469
310
402
434