<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24596

Description Uncharacterized protein
SequenceMDPDPLPLLSLGHVNVSEMMAPPLTVGLALTDSKSSTYALQWALSRFKFTKDDDAPIFLLIHVLTKLLTVPTPMGNHIPIDKVRTDVADAYFKDVHHQAQQMLLLYKNMCHQNKVKAQVLLIKGNDVSQTVSTVVSDYQIKILIVGVTARTRKPFGNRTSSKICKNVPSFCTAYLVSKDGLSSLYSSSLESDLASSSKSDDLSDEMSSSSVTSNNSSDQSPFDSPRLLGSNLPSENPKNSSPAHRNRSLTLYDYLNGSTSIYPDKDRRVNSSTGTESSKPSELKGSNEVLRQESLLQGMLSDNKDHISTELEKLRLELRLIQGKHKLVQDESDDASRQASKVDLICYQRMAELAAKRMEEEAQLREIQSRLDKANDNVEKQKAHRYAAEQALNHVQDLVRGEVMQKNMLQVKASRDADKKLRLEKLFVLQGNSYSTFTWEEIDNATSSFADNLKIGSGANGTVYKGYLNHSAVAIKVLHSDDNSSNKHFRQELEVLGKIHHPHLVMLLGACVERGCLVYEYMENGSLEERLRCKSGTAALPWCDRLRIAWEVASALVFLHSSKPNPIIHRDLKPENILLDGNLVSKVGDVGLSTLVSSGSGGSSSTMYKKTALAGTLFYIDPEYQRSGQVSVKSDTYALGMVMLQLLTARAPIGLAEVVERAVEDGKLRDILDENAGWTWAMEEAQEMADLALRCLEMRGKDRPDLKTRVAVDLDRLKRRALPTQPPPEHFICPILKRVMQEPCIASDGYSYERHAIEMWVCDKDVSPVTNVRMPNKTLVPNRSLLTAITAWKSQGGRKPTNKFVTTSPNHL
Length812
PositionTail
OrganismOryza sativa subsp. indica (Rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza> Oryza sativa.
Aromaticity0.06
Grand average of hydropathy-0.410
Instability index42.39
Isoelectric point7.87
Molecular weight90355.91
Publications
PubMed=15685292

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24596
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     151.54|      41|      47|     318|     358|       1
---------------------------------------------------------------------------
  295-  316 (28.55/15.10)	..LLQG...MLSD..NKDHIST................ELEKLRL
  318-  358 (67.89/45.94)	LRLIQGKHKLVQD..ESDDASRQASKVDLICYQRM..AELAAKRM
  364-  408 (55.10/35.91)	LREIQSRLDKANDnvEKQKAHRYAAEQALNHVQDLvrGEVMQKNM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     177.19|      43|      46|      47|      89|       2
---------------------------------------------------------------------------
    4-   41 (45.32/25.67)	......DPLPLLSLGHVnVSEMMAPPLTV....GLALTDSKSSTYALQ
   47-   89 (70.37/43.72)	FKFTKDDDAPIFLLIHV.LTKLLTVPTPM....GNHIPIDKVRTDVAD
   92-  137 (61.51/37.33)	FKDVHHQAQQMLLLYKN.MCHQNKVKAQVllikGNDVS.QTVSTVVSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.30|      20|     408|     175|     196|       3
---------------------------------------------------------------------------
  175-  196 (31.39/22.80)	LVSK..D.GLSSLYSSSleSDLASS
  583-  605 (26.91/13.31)	LVSKvgDvGLSTLVSSG..SGGSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.91|      18|      18|     209|     226|       5
---------------------------------------------------------------------------
  209-  226 (31.92/19.49)	SSVTSNNSSDQSPFDSPR
  230-  247 (32.98/20.39)	SNLPSENPKNSSPAHRNR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24596 with Med32 domain of Kingdom Viridiplantae
Unable to open file!