<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24593

Description Uncharacterized protein
SequenceMDSDGEEYDAMWSARCSVSSSAGSLQDAGDQWDEQSLAAGEDKVFVAVDEDVEHGKSTFLWALQNLATDGANIVVAHVHSPAQTLSKVHCTRMKPEEISEYLMLAKEEAEKNLDEYALIAKSTGKDMKTDCQKVLIDMDDVAKGLEELITLHGITRLVMGAAADQHYSEEMKEPNSKIALKLMETASPSCKIWFTCNGHLICTREPNENLLAIYVPPAQSNTVPLSMCSISSQMSSIELKNEAPSSEEYTLRSLAQSAMSDWDYIFGDWGRTGYGSLRTDDAISIPEATTLAAIVDDTNKQRSVMHSPQESDSVNFSSPACDPQQEEEEPNLDEDMHDILNEACTRAELLKKEVDGESSKRRKAEMDLLIALQRVQESEKSYLQEVNQRKETERTLARQRLEIDEMKRRHNTLYDELQDTKKQKLLLEQHISEIKSAAKDYVQEITEYFIQESCEEAKKFQKIKMDLLAMLQRVKDVENLNRNEKMQRKDMEEKIARQRMEIEETKRQRDELYHELKDVKEQKLCLERLDSSKETKRRRKAESEMLSALKKVHDLEHQYLNELKRREAVEETFARQKEEIQETKRELNKIRSRHMTETKAHEEKLAESIRFIQKIQAKYDKTLHERDTAIAESEKLRQMNRDGASMIATTQIADFSFFELRQATQDFDTALKIGTGRFMNVYKGFIRNTAITVMLLHPQGLQGQLEFHQEVVVLSRLRHPNVMMLIGACPEAFGMVYEFLPNGSLEDQLSCKKNTPPLTWKMRTRIIGEICSALTFIHSQKPHPVVHGNLNPMNILLDANFVSKLHVCQLLRKYNTGNNTSGTSSYIDPEFLSTGELAPRCDVYSFGIIILHLLTGKSPQNITTIVEDAMEKRQLHSIMDTSAGSWPFVQANQLAHLGLRCANLSGRHRPDLTGEVWGVIKPLLKDASQNFGCKQAFEALSDDTQAPSYFICPILQEVMTDPHIAADGYTYEANAIRNWLDGGNARSPMTNLSLENRELTPNRVLRSAILEWRQHRR
Length1017
PositionTail
OrganismOryza sativa subsp. indica (Rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza> Oryza sativa.
Aromaticity0.06
Grand average of hydropathy-0.598
Instability index53.01
Isoelectric point5.52
Molecular weight115965.14
Publications
PubMed=15685292

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24593
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     186.92|      26|      26|     343|     368|       1
---------------------------------------------------------------------------
  343-  368 (35.53/20.06)	ACTR..AELLKKEVDG......................ESSKRRKAEMDL
  371-  396 (37.42/21.51)	ALQR..VQESEKSYLQ......................EVNQRKETERTL
  470-  495 (34.33/19.14)	MLQR..VKDVENLNRN......................EKMQRKDMEEKI
  496-  545 (20.36/ 8.41)	ARQRmeIEETKRQRDElyhelkdvkeqklclerldsskETKRRRKAESEM
  548-  573 (36.27/20.63)	ALKK..VHDLEHQYLN......................ELKRREAVEETF
  576-  597 (23.01/10.44)	QKEE..IQETKRE.LN......................KIRSRHMTE...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     190.40|      66|     123|     796|     875|       2
---------------------------------------------------------------------------
  796-  875 (91.99/98.52)	LLDA..NFvsklhVCQllRKYNT.GNNTSGTSSYIDP...EFLSTGELAprCDVYSF.GIIILHLLTG...KSPqniTTIVedAMEKRQL
  924-  999 (98.41/65.51)	LKDAsqNF.....GCK..QAFEAlSDDTQAPSYFICPilqEVMTDPHIA..ADGYTYeANAIRNWLDGgnaRSP...MTNL..SLENREL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     319.07|      94|     216|      16|     115|       3
---------------------------------------------------------------------------
   16-  115 (146.01/130.18)	CSVSSSAGS..LQDAGDQWDE...QSLA..AGEDKVFVAVDEDVeHGKSTFLWALQN...LAT..DGANIVV.......AHVHSPAQTLSKVHctrmKPEEiSEYLMLA.......KEEAEKNLDE
  162-  220 (55.11/33.81)	..............AADQHYS...EEMK..EPNSKIALKLMETA..SPSCKIWFTCNghlICTrePNENLLA.......IYV.PPAQS......................................
  228-  334 (117.94/86.06)	CSISSQMSSieLKNEAPSSEEytlRSLAqsAMSDWDYIFGD....WGRTGY....GS...LRT..DDA.ISIpeattlaAIVDDTNKQRSVMH....SPQE.SDSVNFSspacdpqQEEEEPNLDE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24593 with Med32 domain of Kingdom Viridiplantae
Unable to open file!