<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24584

Description Uncharacterized protein
SequenceMASAPNPGQTLPRMPVVVPAMVPPSNGAEASTGGASNTDPSPDAWDSEMQLVSSLAKLQKMEAMIHQLRTLLPERLLEPLAPIVNPKAAAGRPVPKSPQMLYEQLAQAARAGVSELQEFQSMWRSPEMKAVWDRIDAQIKENGGVMLQPTGKWERDYDTILADLREEEQTQNEQQQKANEEMERSKIQATEGGWRAIVEGFAQKNVPGVRVLASQSEAAVTVVLVKAGMVFRVEAIAGQDGNGVPDWRVFTRTPGGQTPSKVETAVAQCLNSRPRQWDLLYLLDMISSYSTIKQTPCAKCTKMTDSTATLPTIRKPSSTPQEQGSQTWEAYHQGCTE
Length337
PositionTail
OrganismAspergillus niger (strain CBS 513.88 / FGSC A1513)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Eurotiomycetidae> Eurotiales> Aspergillaceae> Aspergillus> Aspergillus subgen. Circumdati.
Aromaticity0.05
Grand average of hydropathy-0.497
Instability index55.52
Isoelectric point5.39
Molecular weight36942.51
Publications
PubMed=17259976

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24584
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     109.23|      32|     146|     149|     180|       1
---------------------------------------------------------------------------
  149-  180 (55.63/28.48)	PTGKWER..DYDTILADLREEEQTQNEQQQKANE
  296-  329 (53.60/27.23)	PCAKCTKmtDSTATLPTIRKPSSTPQEQGSQTWE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     171.61|      51|      77|       1|      52|       2
---------------------------------------------------------------------------
    1-   52 (87.41/44.17)	MASAPNPGQTLPRmPVVVPAMVPPSNGAEASTGGASNTDPSPDAW.DSEMQLV
   80-  131 (84.20/38.90)	LAPIVNPKAAAGR.PVPKSPQMLYEQLAQAARAGVSELQEFQSMWrSPEMKAV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24584 with Med27 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MASAPNPGQTLPRMPVVVPAMVPPSNGAEASTGGASNTDPSPDAWDSEMQL
1
51










Molecular Recognition Features






MoRF SequenceStartStop




1) WRVFTR
247
252