<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24545

Description Uncharacterized protein
SequenceMRAPPSWKNDLSKLTKFIEMLEEKVFASVKDEAEYIAKLSAKLKTLSSAPPQSAESNLSVSNPSGSGAEREVNVEWQEQLYQKVQTMRSTYVTKLDFVYKELCRKLQQLESVPQQPKTSDIEKLRHHKQSLECIFSALKVNRNQITPDYKQKLDQIEKYIHSISKAKMIPSHHQKQHSADVHSVQQFVPSHSRNSEGEISEKKPTLQSTSPQNSYSTNQSKSTQTIQTHLKDQQVANRFNISQQQAKETSIIKGCGTDVQQQTNGQKKSPEAFVIRTPGVSASLLFDEFSNVNGTSHNATVISDDPSTAMQRLIKVLSSMSDEALMASSGEIGAVVRLNDCISTLEPLNLSPDSEIDTNLEGVNDADLQTRYMTYDDFVQRGREMNRFINSMPTSETFFHRAGAENPYSSSFTSQENYTLFDEIKKINNRLIDTEVVIDEEKTFISASGRVDEHSKEGMLVKLIFNSTSVDVNLISQYASSNKKSIIKPLRILVPSSYPLCSPFILDEMPLKISEEMDDLSMKAKFRLRLSLQSLHQPMSLRDIATSWDHCAREAIFEFAKLHGGGTFSSKYGGWEICHYDG
Length582
PositionTail
OrganismLupinus angustifolius (Narrow-leaved blue lupine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> genistoids sensu lato> core genistoids> Genisteae> Lupinus.
Aromaticity0.07
Grand average of hydropathy-0.582
Instability index47.96
Isoelectric point6.28
Molecular weight65596.08
Publications
PubMed=27557478

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24545
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     101.13|      24|     132|     285|     308|       1
---------------------------------------------------------------------------
  285-  308 (42.00/24.74)	LFDEFSNVNGTSHNATVISDDPST
  420-  443 (36.78/20.90)	LFDEIKKINNRLIDTEVVIDEEKT
  464-  480 (22.35/10.29)	IF......NSTSVDVNLISQYAS.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.14|      33|     132|     195|     239|       2
---------------------------------------------------------------------------
  195-  228 (49.20/44.04)	SEGEISEKKpTLQSTSPQNSYSTN.QSKSTQT..IQT
  242-  277 (45.94/18.24)	SQQQAKETS.IIKGCGTDVQQQTNgQKKSPEAfvIRT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.00|      26|      44|     104|     129|       3
---------------------------------------------------------------------------
  104-  129 (43.67/29.39)	RKLQQLESVPQQPKTSDIEKLRHHKQ
  151-  176 (44.33/29.95)	QKLDQIEKYIHSISKAKMIPSHHQKQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24545 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ISKAKMIPSHHQKQHSADVHSVQQFVPSHSRNSEGEISEKKPTLQSTSPQNSYSTNQSKSTQTIQTHLKDQQVANRFNISQ
163
243










Molecular Recognition Features






MoRF SequenceStartStop




NANANA