<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24536

Description Uncharacterized protein
SequenceMQYMISNIPETTSSLARRVDASTNWKEYSSPDGRKYYYNKVTKKSKWLIPEELKLARAQVEKTVVNGTCPEAILIPHTQPSASPHVVEAAPSADTSSLTVPGEPTSPVSVAPVGTTFTNNLQTDITSGASASPSVAPQSGTKVEEVEAPGNTVKPSDTGVGSDEASVTDVNTAKTPMDGANNFSVQYTQGSEDGVPAEDKEDGKNDSLGEKTDDVASEAKAVEPEPLVYANKMEAKDTFKALLESVNVGSDWTWDRTMRVIINDKRYGALKTLGERKQAFNEYLSQRKKQEVEERRMKQKKAREDFKKMLEESTDLTSSTRWSKAVPIFENDERFKAVERDRDRRDMYDSFMEEFVIKERARAQAERKQNVMEFRKFLESCDFIKASTQWRKVQDRLEADERCSRLEKIDRLEIFQDYLHDLAKEEEEQKKIQKEELRKTERKNRDEFRKLMEEHIAAGILTAKTNWRDYHSKVKDLPAYVAAASNTSGSIPKDLFEDVAEELEKQYNEEKSRVKDAVKLAKITLSSTWNLEAFKSALSKDISSPPISEFNLKLVFDELLERAREKEEKEAKKRKRHADDYFHLLCSTKDISASSKWEDYKPLIEDTQEFRSIGDESLCKGLFEEYIIQLKEEAKENQWKRKEEKAKKEKDKEEREKRKGKQRREKEGGREREKGEARVKDKADSDSADKRSEDGNRKHRRQQSPEDISHEKEKERSKKSHGHSSSRKKSRRHGHESDESRHKRHKRDHRSDSHREADYGKVEDGDHGDNVVDRW
Length775
PositionUnknown
OrganismLupinus angustifolius (Narrow-leaved blue lupine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> genistoids sensu lato> core genistoids> Genisteae> Lupinus.
Aromaticity0.06
Grand average of hydropathy-1.197
Instability index49.93
Isoelectric point6.60
Molecular weight89236.09
Publications
PubMed=27557478

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24536
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     343.26|      64|      66|     208|     271|       1
---------------------------------------------------------------------------
  140-  206 (62.12/33.31)	....GTKV...EEVE...AP...GNTVKPsDTGVGSDEASVTDvnTAKTPM.DG.ANnFS.....VQYTQGSEDGVPAEDKEDGKND
  208-  271 (101.70/59.45)	L...GEKT...DDVA...SE...AKAVEP.EPLVYANKMEAKD..TFKALL.ES.VN.VG.....SDWTWDRTMRVIINDKRYGALK
  273-  339 (82.17/46.56)	L...GERKqafNEYL...SQ...RKKQEV.EERRMKQK.KARE..DFKKMLeES.TD.LT.....SSTRWSKAVPIFENDERFKAVE
  351-  407 (67.75/37.03)	F...MEEF.....VI...KErarAQAERK.Q.....NVME......FRKFL.ES.CDfIK.....ASTQWRKVQDRLEADERCSRLE
  412-  467 (29.53/11.80)	LeifQDYL...HDLAkeeEE...QKKIQK.EELRKTER.KNRD..EFRKLM.EEhIA.AGiltakTNW...................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     238.09|      62|      73|     624|     696|       3
---------------------------------------------------------------------------
  557-  622 (60.16/16.53)	........DELLERAREKEEKEAKKRKRHADDyfhllcstkdiSASSK.WEDYKPLIE.DTQE..FRS..iGD.ESLCKGL
  635-  696 (99.47/42.10)	KENQWKRKEEKAKKEKDKEEREKRKGKQRREK...........EGGRE.REKGEARVK.DKAD..SDS...AD.KRSEDGN
  697-  766 (78.46/22.39)	RKHRRQQSPEDISHEKEKERSKKSHGHSSSRK...........KSRRHgHESDESRHKrHKRDhrSDShreADyGKVEDGD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.58|      16|      20|      78|      95|       4
---------------------------------------------------------------------------
   78-   95 (25.22/20.43)	TQPSA..SPhvVEAAPSADT
   99-  116 (24.36/12.82)	TVPGEptSP..VSVAPVGTT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.92|      16|      19|     515|     532|       5
---------------------------------------------------------------------------
  515-  532 (22.87/21.11)	KDAvkLAKITLS...STWNLE
  535-  553 (20.05/11.20)	KSA..LSKDISSppiSEFNLK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.63|      17|      19|       9|      25|       6
---------------------------------------------------------------------------
    9-   25 (28.45/17.23)	PETTSSLARRVDASTNW
   31-   47 (31.18/19.59)	PDGRKYYYNKVTKKSKW
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24536 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NGTCPEAILIPHTQPSASPHVVEAAPSADTSSLTVPGEPTSPVSVAPVGTTFTNNLQTDITSGASASPSVAPQSGTKVEEVEAPGNTVKPSDTGVGSDEASVTDVNTAKTPMDGANNFSVQYTQGSEDGVPAEDKEDGKNDSLGEKTDDVASEAKAVEPEPLVYA
2) NQWKRKEEKAKKEKDKEEREKRKGKQRREKEGGREREKGEARVKDKADSDSADKRSEDGNRKHRRQQSPEDISHEKEKERSKKSHGHSSSRKKSRRHGHESDESRHKRHKRDHRSDSHREADYGKVEDGDHGDNVVDRW
66
637
230
775










Molecular Recognition Features






MoRF SequenceStartStop




1) ARVKDK
2) DGRKYYYNKV
3) RKKSRR
677
32
727
682
41
732