<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24511

Description Uncharacterized protein
SequenceMNLIVQKGCPILGQNLSGLSKCIERFEEKVYASAKDEADYIAKISAKVKALYLIPQEAESKPLVPTSSASGAGKAANIDWQEQIYEKVESSQKPKANDLENCKHIKKIIENIFAILEVNKSQINTEFKEKLENAEKWIEYIMQRINVSSHNQGQDSDDLQSGQQFVPPHSITSQEEIFERNLSPQVLRPQNYHSKRQISQPKKMPLQEQQVANQCSNSQPKAKQMSITKGPGNAVQQQPHNALKATEGFGVSINTPVIPDSHKPTVASDEPSAAMQRLVKVLTSMSPEMLSASIGEIREIVYLNDAIPASILLDGSPKRVQKQSEPSLIPQGMKVSRSINAMTLDTSKIYASTLDSFNRLTDAKEPDLNSVTPQAKRPRIVENHTLLEEIKEINKQLIDIEVVIGGKDSIQSAVAGAAESGDGLVVKFLFSAVTVNLNLISHYTDKRSIIKPLWLLVPTSYPFSSPVILDKMPLEASTYSEDLEDLWMTAKAKLRFSLQNMKQPWSLGDIAISWEQCAREAILEYAQHNGGGTFSSKYGGWEIC
Length544
PositionTail
OrganismLupinus angustifolius (Narrow-leaved blue lupine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> genistoids sensu lato> core genistoids> Genisteae> Lupinus.
Aromaticity0.06
Grand average of hydropathy-0.414
Instability index60.61
Isoelectric point6.22
Molecular weight60343.05
Publications
PubMed=27557478

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24511
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     347.30|      99|     133|      44|     144|       1
---------------------------------------------------------------------------
   44-  136 (139.62/74.79)	...........................................ISAK.VK...ALYLIPQEAE.SKPLVPTSSASGAGKAANIDWQEQIYEKVESSQKPKA..........NDLENCKH.IKKIIEN...IFAILEVNKSQINTEF....KEKLENAEK
  139-  271 (111.35/61.86)	EYIMQRinvsshnqgqdsddlqsgqqfvpphsitsqeeifernLSPQ.V.......LRPQNYH.SKRQI........SQPKKMPLQEQQVANQCSNSQPKAkqmsitkgpgNAVQQQPHnALKATEG....FGV.SINTPVIPDSH....KPTVASDEP
  272-  413 (96.34/47.09)	SAAMQRlvkvltsmspemlsasigeireivylndaipasilldGSPKrVQkqsEPSLIPQGMKvSRSINAMTLDTSKIYASTLD....SFNRLTDAKEPDL..........NSVTPQAK.RPRIVENhtlLEEIKEINKQLIDIEVviggKDSIQSA..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.13|      15|      32|     450|     464|       2
---------------------------------------------------------------------------
  450-  464 (28.16/17.50)	IKPLWLLVPTSYPFS
  483-  497 (25.98/15.67)	LEDLWMTAKAKLRFS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24511 with Med15 domain of Kingdom Viridiplantae
Unable to open file!