<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24508

Description Uncharacterized protein
SequenceMPSQSHLHSLYDSHFNYMLHMLYLAQNRYFEDEGFTEYLKYLQYWQHPEYIKFIMYPHSLYFLELFQNANFCNAMAHPNNKELTHRQQFYFWKNYRNNRLKHLLPRSLPKTSATPTPSAPISTSNQMPLPALPPVPTTNVTMTTSSTRAPSPMPYRIPPGSTIPKNEMRNSAVEKMTENGDHSDLDKTANIMSDIICPVLLETVVKDVILDKAAVKQSGDAWRIVHDSCLPILHLIDTRRSIPYAIKQIQELLGISCTFAQAIQRLATSVKMVAKGLLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPRKCFERAAEKFHTDSLSSVVASCSWGKHVAVGTGSKFDVVWNAKEIKSSENRGMDVYNFLYMVKDFTSGEEEKNACLGEDIDDLLEDENMDWGMSPQHTSGFDDAVFEENCELPNGSTSNGWDINGNKNETKSNDWSGWGSNKAEGVSENAKEDSWSSGKQKTDVVKEDSSRSNAWDANTKKTDTKSNDWLAWGGNKSETQDGSSDRAQEDSWSSGQRKANVTQEDPKSGSWDADTNQTKTKSNDWTAWGGKKSEIQDVGFKRAEEDSWSCGNKKANVAQEDSSKPGAWDANTNQTKTKSKDSLDWGGKKSEIQDGGSGRVQEDSWNSGQRKASVIQDDSSKPGAWDAKANQAKTPSNEWSGWGGKKSEVQGGGFDRSQEDSGSSWKWNAESKVGSKVIQEEASKSNAWDANTDQKKTKSNDWSAWGRSKSEIQDSGSERAQEDSWGSAKLKAESNVGADVRQKDSSRSNAWESNFNKSSENPAWGSQNESNQAASSQGWDSQIASANSGPDKNFQWGKPKSAESQSWDPKNESNQAASSQGWDSQVASANSDSDKSFQWGKQGRESFKKNRFEGSQGRGSNAGDWRNMNRPPRPPPPMYTPEEQEVRKDIDSIMQSIRRIMQQEGYNDGDPLAAEDQAFVLENVFEHHPDKETKMGDGIDYVMVSRHSNFQESRCMYVVLKNGKKEDFSYRKCLENLVRKKYPDVAESFNDKHFRKPRGRAGGDQAPTTPLRTSTETNQAPRTPWPTSTETNQTPKSSWPTSTETNQAATSSWPTSTETNQAPTSSWPTSTETNQAPTATWPTSSEGNE
Length1134
PositionMiddle
OrganismLupinus angustifolius (Narrow-leaved blue lupine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> genistoids sensu lato> core genistoids> Genisteae> Lupinus.
Aromaticity0.09
Grand average of hydropathy-1.008
Instability index45.13
Isoelectric point5.74
Molecular weight126534.06
Publications
PubMed=27557478

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24508
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            12|     477.84|      41|      41|     802|     842|       1
---------------------------------------------------------------------------
  439-  469 (33.79/ 8.61)	NGSTS..N..GWDI....................NGNKN..etK..S..NDWSGWGS....N.KAE
  473-  506 (35.58/ 9.42)	ENAKE..D..SWS.........SGKQ.......KT.DVV....KedS..SRSNAWDA....N.TKK
  507-  529 (29.34/ 6.60)	TDTKS..N..DW.......................LAWG...gN..K..SE.....T...QD.GSS
  530-  561 (28.64/ 6.29)	DRAQE..D..SWSSGQ..RKAN.........................vtQEDPKSGS...WDaDTN
  604-  650 (42.78/12.67)	QEDSS..KpgAWDANT..NQTKTKSK.......DSLDWG...gK..K..SEIQDGGSgrvQE.DSW
  661-  704 (46.52/14.36)	QDDSSkpG..AWDAKA..NQAKTPSN.......EWSGWG...gK..K..SEVQGGGF...DR.SQE
  705-  739 (35.74/ 9.50)	DSGSS..W..KWN.....AESKVG.S.......KVIQ.....eE..A..SKSNAWDA....N.TDQ
  740-  762 (29.81/ 6.82)	KKTKS..N..DWSA.......................WG....R..S.kSE.....I...QD.SGS
  763-  816 (45.59/13.94)	ERAQE..D..SWGSAKlkAESNVGADvrqkdssRSNAWEsnfnK..S..SENPAWGS...QN.ESN
  817-  859 (66.49/23.38)	QAASS..Q..GWDSQI..ASANSGPD.......KNFQWG..kpK..S..AESQSWDP...KN.ESN
  860-  905 (51.38/16.56)	QAASS..Q..GWDSQV..ASANSDSD.......KSFQWGkqgrE..S.fKKNRFEGS...QG.RGS
 1092- 1117 (32.17/ 7.88)	QAATS.....SWPT.....STETNQA.......PTSSWP....T..S..TE...............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     138.08|      26|      26|     111|     136|       2
---------------------------------------------------------------------------
  100-  126 (26.77/ 8.53)	..LKHLLPrsLP...kTSATPTPSAPISTSNQ
  127-  150 (36.95/14.11)	MPLPALPP..VP...tTNVTMTTS...STRAP
  151-  175 (38.31/14.85)	SPMPYRIP...P....GSTIPKNEMRNSAVEK
 1062- 1088 (36.04/13.61)	TNQAPRTP..WPtsteTNQTPKSSWPTST...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.63|      18|      19|      12|      29|       3
---------------------------------------------------------------------------
   12-   29 (34.67/20.05)	DSHF.NYMLHMLYLAQNRY
   32-   50 (31.96/17.97)	DEGFtEYLKYLQYWQHPEY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      89.75|      19|      19|     977|     995|       4
---------------------------------------------------------------------------
  928-  947 (23.03/14.25)	EQEVRKDID........SIMQ..SiRRIMQ
  948-  970 (15.83/ 7.34)	QEGYNDG.DplaaedqaFVL......ENVF
  977-  995 (33.25/24.05)	ETKMGDGID........YVMV..S.RHSNF
  997- 1013 (17.64/ 9.08)	ESRCM............YVVLknG.KKEDF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.38|      14|      19|     361|     375|       5
---------------------------------------------------------------------------
  361-  375 (21.31/17.06)	FDvVWN....AKEIKSSEN
  378-  395 (20.08/10.63)	MD.VYNflymVKDFTSGEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.47|      15|      19|     566|     580|       6
---------------------------------------------------------------------------
  566-  580 (28.67/15.26)	KSNDWTAW..GGKKSEI
  586-  602 (21.80/ 9.59)	KRAEEDSWscGNKKANV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.36|      10|      18|     406|     415|       7
---------------------------------------------------------------------------
  406-  415 (17.78/10.19)	DDLLEDENMD
  427-  436 (18.57/10.95)	DDAVFEENCE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      32.54|      11|      17|     266|     278|       8
---------------------------------------------------------------------------
  266-  278 (13.44/14.06)	LATSvkMVAKGLL
  285-  295 (19.10/11.79)	LASS..MTCGGNL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.97|      15|      15|      67|      81|       9
---------------------------------------------------------------------------
   67-   81 (27.97/18.47)	QNANFCNAMAHPNNK
   85-   99 (30.00/20.41)	HRQQFYFWKNYRNNR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24508 with Med31 domain of Kingdom Viridiplantae
Unable to open file!