<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24505

Description Uncharacterized protein
SequenceMDSNNWIPNQSTEPAMDTSDWRAQLIPDSRHRVVNKIMDTLKKHLPVSGPEGLLELRKIAQRFEEKIFTAATSQQDYLRKISLKMLTMETKSQNTMGNNMPSNQVGPSNLTPDQGLVMQPQVHNPGQQQPVSLPNQPQPRQQILSQNIQNNIAPQANLPPVSSLAQTPSQNMGQNSNVQSTPGQNSVGGTIGQNSNMQNMFPGSQRQMPGRQQVLTQQQPQQSENPQQYLFQQQLFKHKLHMQSQMQQQQQQNLLQPNQLQSSQQSVMQTSSVLQPSMMQASSLSSLQQNQQANNVQQSTQSMLHQHPQVMRHQQQQTSSGHQQQTSMNQQQMLPTQQQQQQQQLMGSQTNATNMQHAQMLGAQNNVGDIQQSQRLLSQQNNFTNLQQRQQQQQLMNQQNNLANMHQQQFGNNAPGLQQQQLLGPESGNPGMQTTHQSAHMKVPITQQSQQHTTNLLPPQAQLSQTQSAPQQLMPQMNTQPAQLQQQYGLQQQQSNSLQHDMQQRHQSSGSMIQQQNALDKQKQLYQSQRALPETSTTSVDSTAQTSQSSGADWQEEVYQKIQTMKESYLPELTEMYQRIATKLQQHESLPQQSKSEQLDRARAFRTMLEHIIAFLKVPKNNISPNFKEKIGSYEKQIINLINANKPKKGMSSLQPGQLPPAHMHSMSQPQSQISQVQSHETQIDSQMQPTNLQGSVATIQQNNMPSLQHNSMSGVSTAQQNMNLIQPGTNFDSGQGNSMNSLQRVPVSSLQQNPIGTPQQPNINSLSSQGGVHGIQPNLNTLQSSSTMLQHQQLKHQQEQQILQSQQFKQHQQRQLLQRQQILQQQQQQQQLHQPGKQQLSAQLQTHQIPQLHQMNDINDIKAQKGMGVKPGIFQQQLTSGQHSAYPHQPLKPGGTYPVSSPQLLQAASPQILQHSSPQVDQQNHLPNSKKVATTMQSSNSPFVGPTPSPPLVPSPMPGDSDKPLPGFSSISNAANIVHQQTVGAVAAQSLAIGTPGISASPLLAEFSGPDNALAATSGKSTVTEQPIERLIRVVKSMSHKTLSAAVSGIGSVVSMNDRIAGSAPGTGSRAAVGEDLVSMTNCRRQARNFITQDGTSGNKRMKRYISAMPLNVISSPGSVNDSIMETSELESTATSTVKRPKTEANHALLEEIREINNQLIDTLVEISDEDVDPTAAAAAAEGAEGTIVKCSFRAVALSPTLKSQYASVQMSPIRPLRLLVPVNYPNCSPILLDKCPVESSKESEDLSVKAELRLSISLRSLSQPMSLGEIAKTWDVCARRAISEHAQQSGGGTFSSKYGTWEDCFD
Length1308
PositionTail
OrganismLupinus angustifolius (Narrow-leaved blue lupine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> genistoids sensu lato> core genistoids> Genisteae> Lupinus.
Aromaticity0.03
Grand average of hydropathy-0.794
Instability index70.50
Isoelectric point9.08
Molecular weight144453.90
Publications
PubMed=27557478

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24505
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     104.35|      26|      26|     312|     337|       1
---------------------------------------------------------------------------
  302-  326 (37.45/10.45)	SMLHQH..PQVmRHQQQQTSSGHQQQT
  327-  353 (34.87/ 8.96)	SMNQQQMLPTQqQQQQQQLMGSQTNAT
  817-  841 (32.03/ 7.32)	LLQRQQIL.QQ.QQQQQQLHQPGKQQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     937.29|     155|     203|     147|     301|       2
---------------------------------------------------------------------------
   65-  202 (197.53/41.98)	.........EKIFTAAT...SQ.....QDYLRKISL..KML.TMetksQ............................NTMGNNMPS...NQVGP....S....................NLTPDQGLVMQ.PQVHNPGQQQPVSLPNQPQPR.....QQILS.......qNI..QNNIAPQAN.......L....P.....PVSSLAQTPSQNMGQNSN...VQSTPGQNSVGGTIGQNS...NMQNMFP
  203-  301 (152.28/30.53)	GSQRQMPGRQQVLTQQQ...PQQSENPQQYLFQQQLFKHKL.HM....Q............................SQMQQQQQQ...NLLQP....N....................QLQSSQQSVMQTSSVLQPSMMQASSLSSLQQNQQANNVQQSTQ........................................................................................
  406-  577 (160.34/32.57)	.HQQQFGNNAPGLQQQQllgP.ESGNP..GM...QTTHQSA.HM....K............................VPITQQSQQhttNLLPPqaqlS....................QTQSAPQQLMPQMNT.QPAQLQQQ..YGLQQ.QQSNSLQHDMQqrhqssgsMIqqQNALDKQKQlyqsqraL....PetsttSVDSTAQT.SQSSG..AD...WQEEVYQKI..QTM.KESylpELTEMY.
  578-  710 (158.67/32.14)	..QRIATKLQQ..HESL...PQQSKSEQ..LDRARAFRTMLeHI....I............................AFL.KVPKN...N.ISP....N.................fkeKIGSYEKQIINLINANKP...K.KGMSSLQPGQ..........................LPPAH.......MhsmsQ.....PQSQISQVQSHETQIDSQ...MQPTNLQGSV.ATIQQN....NMPSLQH
  711-  784 (104.97/18.55)	NS...MSG...VSTAQQ...............N.......M................................................NLIQP...gT....................NFDSG................QGNSMNSLQR..................................................vPVSSLQQNPIGT.PQQPN...INSLSSQ...GGVHGIQP...NL.NTLQ
  785-  967 (163.48/33.36)	SSS.TMLQHQQ.LKHQQ...EQQ.......ILQSQQFKQ...HQ....QrqllqrqqilqqqqqqqqlhqpgkqqlsAQLQTHQIP...QLHQM....NdindikaqkgmgvkpgifqqQLTSGQHSAYPHQP.LKPG..GTYPVSSPQLLQAA.....SPQ.....ilqHS..SPQVDQQNH.......L....P.....NSKKVATT....M.QSSNspfVGPTPSPPLVPSPMPGDS...D..KPLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.31|      16|      16|     371|     386|       3
---------------------------------------------------------------------------
  356-  371 (27.80/10.53)	QHAQMLGAQNNVGDIQ
  372-  387 (28.51/10.98)	QSQRLLSQQNNFTNLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     237.43|      82|     110|    1051|    1140|       5
---------------------------------------------------------------------------
 1051- 1140 (115.00/98.89)	IGSVVSMNDRiaGSAPGTGSRAAVGEDlVSMTNCRRQArnfITQDGTSGNKRMKRYISAM.PLNVIS.......SPGSVNDSIMETSElESTATStVK
 1162- 1251 (122.43/77.97)	IDTLVEISDE..DVDPTAAAAAAEGAE.GTIVKCSFRA...VALSPTLKSQYASVQMSPIrPLRLLVpvnypncSPILLDKCPVESSK.ESEDLS.VK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.23|      12|      19|       7|      18|       6
---------------------------------------------------------------------------
    7-   18 (22.59/12.49)	IPNQST...EPAMDT
   26-   40 (17.64/ 8.05)	IPDSRHrvvNKIMDT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24505 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NKPKKGMSSLQPGQLPPAHMHSMSQPQSQISQVQSHETQIDSQMQPTNLQGSVATIQQNNMPSLQHNSMSGVSTAQQNMNLIQPGTNFDSGQGNSMNSLQRVPVSSLQQNPIGTPQQPNINSLSSQGGVHGIQPNLNTLQSSSTMLQHQQLKHQQEQQILQSQQFKQ
2) RKISLKMLTMETKSQNTMGNNMPSNQVGPSNLTPDQGLVMQPQVHNPGQQQPVSLPNQPQPRQQILSQNIQNNIAPQANLPPVSSLAQTPSQNMGQNSNVQSTPGQNSVGGTIGQNSNMQNMFPGSQRQMPGRQQVLTQQQPQQSENPQQYLFQQQLFKHKLHMQSQMQQQQQQNLLQPNQLQSSQQSVMQTSSVLQPSMMQASSLSSLQQNQQANNVQQSTQSMLHQHPQVMRHQQQQTSSGHQQQTSMNQQQMLPTQQQQQQQQLMGSQTNATNMQHAQMLGAQNNVGDIQQSQRLLSQQNNFTNLQQRQQQQQLMNQQNNLANMHQQQFGNNAPGLQQQQLLGPESGNPGMQTTHQSAHMKVPITQQSQQHTTNLLPPQAQLSQTQSAPQQLMPQMNTQPAQLQQQYGLQQQQSNSLQHDMQQRHQSSGSMIQQQNALDKQKQLYQSQRALPETSTTSVDSTAQTSQSSGADWQEE
3) RQLLQRQQILQQQQQQQQLHQPGKQQLSAQLQTHQIPQLHQMNDINDIKAQKGMGVKPGIFQQQLTSGQHSAYPHQPLKPGGTYPVSSPQLLQAASPQILQHSSPQVDQQNHLPNSKKVATTMQSSNSPFVGPTPSPPLVPSPMPGDSDKPLPGFSSISN
645
79
815
811
557
974










Molecular Recognition Features






MoRF SequenceStartStop




NANANA