<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24501

Description Uncharacterized protein
SequenceMESNDILEELLNIDVEIEDVQDQIRGLIERQEKLYERKSELSAILEACKDSENQINNGSGSVENWSAPFEWDSQADDLRLNIFGISSYRANQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLRDGIALIVSPLLSLIQDQVMGLTALGIPAYMLTSTTSKDNEKFIYKALEKGEEELKVLYVTPEKISKSKRFMSKLEKCNHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPMVALTATATQRVQNDLMEMLRIPRCVKFVSSVNRPNLFYMVKEKSSVGKVVIDEIAEFIQESYPNNESGIVYCFSRKECEQVAKELRDRGVSADHYHADMDVNAREKVHMRWSNNKLKVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPGDVPRQSSMVFYENSGLQNLYDIVRYCQSKRQCRRNAFFRHFAEPLQDCNGMCDNCAFSSEVKEVDVTRHAILMVSLLQDLQANDQRSTMLQLVEKMKGKQKELGAELKREEIEQLILQLLLERALKEEYQHTPYATNAYIAVGPLAKQISQGKRAVKLEIYSEQKTKAGVRVAKCSLGSSGLELKLDELRKELSSIHGGILPHSILSTQQISLLCSQKPNSLEQARLIELEKVIGKLKTEKYGSRILEQIEKYADFKQSDEQGTDGRASKRLKTKKNLVLIDSSEDEA
Length706
PositionUnknown
OrganismLupinus angustifolius (Narrow-leaved blue lupine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> genistoids sensu lato> core genistoids> Genisteae> Lupinus.
Aromaticity0.07
Grand average of hydropathy-0.404
Instability index48.55
Isoelectric point6.55
Molecular weight79913.65
Publications
PubMed=27557478

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24501
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.40|      30|     119|      20|      55|       1
---------------------------------------------------------------------------
   20-   55 (44.17/47.13)	VQDQIRGLIERQEKLYERKSELSaileacKDSENQI
  140-  169 (52.23/38.84)	IQDQVMGLTALGIPAYMLTSTTS......KDNEKFI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     167.93|      54|     195|     172|     235|       2
---------------------------------------------------------------------------
  172-  235 (78.17/79.41)	ALEKGEEELKVLYVTPEKISKSkrFMSKLEKCNHAGRLSLISidEahcCSQWghdFRP.D.........YKNLG
  370-  433 (89.76/58.02)	AFGMGINKPDVRFVIHHSLSKS..METYYQESGRAGRDGLPS..E...CLLY...FRPgDvprqssmvfYENSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     244.46|      67|      67|     474|     540|       3
---------------------------------------------------------------------------
  474-  540 (101.20/75.19)	AFSSEVKEVDVTRHAIL...MVSLLQDLQANDQRSTMLQLVEKMKGKQK..ELGAELKREEIEQLILQLLLE
  542-  605 (94.04/69.28)	ALKEEYQHTPYATNAYI...AVGPLAKQISQGKRAVKLEIYSEQKTKA.....GVRVAKCSLGSSGLELKLD
  617-  670 (49.23/32.33)	.........GILPHSILstqQISLLCSQKPNSLEQARLIELEKVIGKLKteKYGSRI.LEQIEK........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.54|      19|     123|     310|     328|       4
---------------------------------------------------------------------------
  310-  328 (35.97/24.60)	NNESGIV.YCFSRKECEQVA
  435-  454 (32.57/21.57)	QNLYDIVrYCQSKRQCRRNA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24501 with Med34 domain of Kingdom Viridiplantae
Unable to open file!