<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24498

Description Uncharacterized protein
SequenceMAMNQIGVPKDPDEEPVPHPQEEEVSNSKGSLKNNEAIVSSEKEEEKEEEYVPMEEDSLKPATVFTIRLNQPSSNLLHKMSVPELCRNFSAVSWCGKLNAIACASETCARIPSSTTNPPFWIPIHIVIPERPTECASFNVTADSPRDSVQFIQWSPASVPRALLIANFLGRVTIWTQPSQGQAHRVLDTNFWLCEHEWRQDIAVVTKWLSGVSPYKWLSSKSTAPANSKSTFEKFLSQQSQTSARWPNFLCICSVFSSGSVQLHWSQWPPSQNATPPKWFCTNKGLLGCGPSGIMTADAIITDSGAMHVAGVPLANPSTIVVWEVMPGPGNGFHVTPKTSINNGFPPLNPPNWTGFAPLAAYLFSWQDYLLSEEKQGKKQTDHNLGDDSITLHSSPISNFSAYVSPETAAQSAATTTWGSAVTAVAFDPIHGGSVIAVVIVEGQYMSPHDPDEGPSITRWRVQRWESSLQHVVIHPIFGDPTSSIGGQPPMQTVWHSKVDLTIPPTRDVKTHQVPAVGMNNDVQKALELGFGKSNRVDFDPFDLPSDVRTLATVVYSAHGGEIAVNFLQGGVHIFSGPNFEPVDNYQINVGSTIAAPAFSSTSCCSACVWHDTSKDQTILEIIRVLPPAIPANQVKARSSTWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVSLYSVIAFLDVDFHSLPSAQHRQHYCPSLDRIKCRLLEGANAQEVRALVLDMQARLLLDMLGKGIESAMVNPSALVPDPWQASSETMSSIDPEALAVEPALVPNIQAYVDSVLDLASHFLTRLRRYTSFCRTLASHAMTAGSGSNRNVGASPAQNSATPPTNQGGQSGMSSSSGNTQMQAWVQGAIAKINSTPDGVSNPTPNPPFSGPSPIMPIGINTGTFPGTPSVRLIGDCHFLHRLCQLLLFCFFFRRTQLPRYMGGMHRASDTNTTKPQLNASVPGKVEDIAKPVSALVRSDDGQVGRTGQLVPGVKGGEPTPGRSRLGTGNAGQGYTFDEVKVLFLVLMDLCRRTAGLQHPLPVSQVGSSNIQVRLHYIDGNYTVMPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHKRNMFGGPWSDPDYLESVNDAPKLVSSNPLDVRSLEKCDDYYVDHGLWPRKRRMTERDAAFGLNISVGLGAYFGIMGSRRDVVTALWKNGLDGVWYKCIRCLRQTCAFSPPGSTNIPNQNDRESWWISRWAYGCPMCGGTWVRVV
Length1243
PositionTail
OrganismLupinus angustifolius (Narrow-leaved blue lupine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> genistoids sensu lato> core genistoids> Genisteae> Lupinus.
Aromaticity0.08
Grand average of hydropathy-0.240
Instability index47.47
Isoelectric point6.05
Molecular weight135836.15
Publications
PubMed=27557478

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24498
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      30.19|       9|      17|     571|     580|       1
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  571-  580 (13.86/14.77)	GVHIfSGPNF
  591-  599 (16.34/ 9.77)	GSTI.AAPAF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     385.18|     102|     111|     794|     897|       2
---------------------------------------------------------------------------
  270-  345 (63.88/27.46)	.......................................PSQN.ATPPkwfcTNKGllgcG......PSGIMTADAIItdS...GAM.HVAGVP..LANPStivvwevmPGPG.NG.FHVTPkTSINNG....F
  794-  897 (182.59/100.84)	HFLTRLRRYTSFC....RT.LASHAMTAGSGSNRNVgASPAQNSATPP....TNQG....GQSGMSSSSGNTQMQAWV..Q...GAIAKINSTPDGVSNPT........PNPPfSGPSPIMP.IGINTG...TF
  910- 1009 (138.71/69.12)	HFLHRLCQLLLFCfffrRTqLPRYMGGMHRASDTNT.TKPQLNASVP........G....KVEDIAKP.....VSALV..RsddGQVGRTGQLVPGVKGGE........PTP...GRSR.LG.TG.NAGqgyTF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     126.02|      41|     304|     113|     188|       3
---------------------------------------------------------------------------
  126-  173 (54.81/52.17)	IVIPErpTECASfnvTADSPRDS....VQFIQWspASVPRALLIANFLGRVT
  438-  482 (71.20/24.96)	VVIVE..GQYMS...PHDPDEGPsitrWRVQRW..ESSLQHVVIHPIFGDPT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.48|      21|     111|     494|     516|       5
---------------------------------------------------------------------------
  494-  516 (36.58/24.21)	VWH.SKVDLTI.......PPTrdVKTHQVPA
  609-  637 (29.90/13.69)	VWHdTSKDQTIleiirvlPPA..IPANQVKA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.61|      14|      17|     213|     226|       7
---------------------------------------------------------------------------
  213-  226 (26.63/17.56)	SPY.KWLSSKSTAPA
  230-  244 (19.98/11.15)	STFeKFLSQQSQTSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.55|      14|      18|     742|     755|       8
---------------------------------------------------------------------------
  742-  755 (25.24/14.61)	ES.AMVNPSALVPDP
  761-  775 (19.31/ 9.33)	ETmSSIDPEALAVEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.13|      19|     531|     644|     666|       9
---------------------------------------------------------------------------
  644-  662 (37.79/27.78)	RAIAERFWWSLLVGVDWWD
  668-  686 (30.34/11.47)	QSAAEDGIVSLYSVIAFLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.53|      19|     168|    1023|    1043|      10
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 1023- 1043 (31.11/24.23)	CRRTagLQHPLPVSQVGSSNI
 1196- 1214 (38.42/23.23)	CIRC..LRQTCAFSPPGSTNI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24498 with Med16 domain of Kingdom Viridiplantae
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