<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24497

Description Uncharacterized protein
SequenceMSHQREANLAAGVNSNDKIPKLNWLQHANAHENFSTQAMFLTSNFIYSLPAENPSYQQPNGGRCSYLKLLLFGNDFCPNNFQQAWFALSSLQNSSRNYVQPGKSVKVTPRHHDNKRVNSFQGTYESEKLRHPIVTTTPTAVNHNSRVLDSSPNNHIKYTRQLNESTKCIADDVDDIFKNIDLDQIVENYQSTCTPQPSISKFPPITPTADKDARKEDSFLPPELCLDCIHGYKLGLCPEAASHLQELKDNLIAISNELLDNGENLSSAQVAKLRQDRSQLNKQIQQLEKYIQSSNLDEERQRSHFSASMAPPKYSMYETPQQTFLSSGSNGYDAQAYIGTGTCGSSFQSAYMGNGTCGSSSQFHSFSTVDTYGMSSGPVEREAFIPKIIEVNYIEGSGDKRWSSLDFPWTKKLEVNNKKVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPASCLSANMEWTEQQDILRELNSDHCKYKLLYVTPEKVARSDALLRQLESLHIRDLLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPNLRYSVVPKTKKCLEEIDKFIRENHFDECGIIYCLSRMDCEKVSEKLQECGHKSAFYHGSMDPAQRAYVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGLHSSCVLYYSYSDYIRVKHMISQGVMEQNTMTSGYSRSNTTNSGRILETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSSTCQKTCDNCLKITSFIEKDVTETAKQLVELVKLTGQKFSSSHVLEVYRGSLSQMIKKQRHETVRLHGAGKHLSKGEASRVLHHLVVENFLKEEVKKSDVYGSVSSILKVNEPKVRNLFLGGQGINMRFPSSAKASKPGKSDVTPAKGSLTSGKLNPPRVDTLAQPQTEMDLDLSSKLYTALRKLRTAIVKEAGEGVMAYHIFGNATLQQISKKVPRTMEELLDINGIGKAKVSKYGDQLLETIENTISEHYKLDKNSSGSKGSVDSAKRRRPLIEEPEANGEDNDLLNSTDRSKKRTVKRRNKKTEIYDSEEEVDNNDYGCLDEELDFENMDI
Length1156
PositionUnknown
OrganismLupinus angustifolius (Narrow-leaved blue lupine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> genistoids sensu lato> core genistoids> Genisteae> Lupinus.
Aromaticity0.07
Grand average of hydropathy-0.538
Instability index46.69
Isoelectric point7.34
Molecular weight129863.30
Publications
PubMed=27557478

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24497
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     105.44|      32|      40|     792|     827|       1
---------------------------------------------------------------------------
  792-  823 (59.62/46.69)	ENLLRMVSYCENDV..DCRRLLQLVHF.GEKFDSS
  830-  864 (45.82/24.61)	DNCLKITSFIEKDVteTAKQLVELVKLtGQKFSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.16|      35|      41|      48|      85|       2
---------------------------------------------------------------------------
   37-   82 (49.98/38.43)	QAMfltsnfiySLPAENPSYQQPngGRCSYLKLLLFGNDFCpNNFQ
   83-  121 (58.17/33.03)	QAW....falsSLQNSSRNYVQP..GKSVKVTPRHHDNKRV.NSFQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.41|      25|      43|     676|     700|       5
---------------------------------------------------------------------------
  676-  700 (46.15/30.89)	HGSMDPAQRAYVQK..QWSKDEINIIC
  719-  745 (41.26/26.82)	HHSLPKSIEGYHQEcgRAGRDGLHSSC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     159.71|      47|     188|     420|     467|       7
---------------------------------------------------------------------------
  420-  467 (81.96/48.33)	VFgNHSF.RPNQREVINATMSGC....DVFVLMPTGGGKSLTYQLPALICPGI
  610-  661 (77.76/41.65)	VF.RQSFnRPNLRYSVVPKTKKCleeiDKFIRENHFDECGIIYCLSRMDCEKV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     280.23|     116|     847|     122|     299|       8
---------------------------------------------------------------------------
  137-  299 (151.34/223.79)	TPTAVNHNSRVLDSSPNNHIK..YTRQLNESTKCIADDVDDiFKnidldqivENYQSTCTPQPSISKFPPITPTADKDA......................................................................................................................................................................................................................................................................................................................................................................................................................rkedsflppelcldcihgyklglcpeaashLQELKDNLIAISNELLD.NGenLSSAQVAKlRQDrsQLnkqIQQLEKYI.QSSNLDEE
  524-  593 (87.21/36.90)	TPEKVARSDALLRQLESLHIRdlLARIVIDEAHCVSQWGHD.FR........PDYQGLGILKQKFPNTPVLALTATATA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
 1030- 1079 (41.69/ 6.18)	...............................................................................svkedvvqalglvncivfrqsfnrpnlrysvvpktkkcleeidkfirenhfdecgiiyclsrmdcekvseklqecghksafyhgsmdpaqrayvqkqwskdeiniicatvafgmginkpdvrfvihhslpksiegyhqecgragrdglhsscvlyysysdyirvkhmisqgvmeqntmtsgysrsnttnsgriletntenllrmvsycendvdcrrllqlvhfgekfdsstcqktcdnclkitsfiekdvtetakqlvelvkltgqkfssshvlevyrgslsqmikkqrhetvrlhgagkhlskgeasrvlhhlvvenflkeevkksdvygsvssilkvnepkvrnlflggqginmrfpssakaskpgksdvtpakgsltsgklnpprvdtlaqpqtemdldlssklytalrklrtaivkeagegvmayhifgnatLQQISKKVPRTMEELLDiNG..IGKAKVSK.YGD..QL...LETIENTIsEHYKLDKN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24497 with Med34 domain of Kingdom Viridiplantae
Unable to open file!