<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24491

Description Uncharacterized protein
SequenceMSAAPLPSPRPAGLLALVAKPRRAGGGRGGLAPSLCCLSGGLQTELRAPTAPRGGRLTKRSPVPAAPRSRCFGPPRMTTTRPRDSPAPVSVCLGVPRLFFGSAAARHPPFSSSPPSEISPCSLLQFDDFSRDLCVQSLLEIMDMFCDRLSCHGKAEECIGLCRALMSALIWLLHCAAFYAEKVKEALEQAAAENQLKMCLERLEKMLGSTKNRALIHIAKLEETSSWSSVEQSLVKLGESLSSLSNSPLRSQADDCISLIKSIPTMLSVHSEQLNKTGFPTVHAVVLLEGTMNLTGETQPLVEQLMMVKRMQRIPSPLFVLEIWKACFVGLIESPEGTEELKWTAFTFLKIPQVLVKLKKYPQGDKVRLGGPWSCRQRRMRADGACPDPAGARPKLGEGGWGGKKGLGGKGRLGPALPGAECSPLCTAGFHRGRELRLRVPAEADPAARHGRSAMQVSSCMP
Length462
PositionTail
OrganismAnas platyrhynchos platyrhynchos (Northern mallard)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Archelosauria> Archosauria> Dinosauria> Saurischia> Theropoda> Coelurosauria> Aves> Neognathae> Galloanserae> Anseriformes> Anatidae> Anatinae> Anas.
Aromaticity0.05
Grand average of hydropathy-0.137
Instability index69.68
Isoelectric point9.41
Molecular weight49803.70
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24491
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.43|      15|      15|     264|     278|       1
---------------------------------------------------------------------------
  264-  278 (27.15/19.27)	PTMLSV..HSEQLNKTG
  280-  296 (22.28/14.63)	PTVHAVvlLEGTMNLTG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.69|      14|      16|     314|     328|       2
---------------------------------------------------------------------------
  314-  328 (23.03/20.83)	IPSPLFVLEI.WKAcF
  332-  346 (22.66/13.49)	IESPEGTEELkWTA.F
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.69|      16|      27|      13|      28|       3
---------------------------------------------------------------------------
   13-   28 (27.60/13.89)	GLLALVAKPRRAGGGR
   41-   56 (29.10/15.02)	GLQTELRAPTAPRGGR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      32.94|      12|      23|      58|      77|       4
---------------------------------------------------------------------------
   57-   71 (19.34/ 8.68)	L.TKR...SPvpaAPRSRC
   77-   92 (13.60/ 9.25)	MtTTRprdSP...APVSVC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.63|      15|      16|     209|     223|       5
---------------------------------------------------------------------------
  199-  216 (17.31/ 9.49)	CLERLEK.mlgSTKNRALI
  217-  235 (16.32/ 8.54)	HIAKLEEtsswSSVEQSLV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24491 with Med24 domain of Kingdom Metazoa
Unable to open file!