<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24487
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MVSPVLRVFSRVVLTTVLGRTDEDTEGQRGPCHTALEWLRQDLNSSSRSRGFCHVVPPCSQGCDSQKGVLGSQRQTPEGQARAGGRGCPELTPPPPPQSGASSFGEKFSRVKFSPSLTLFGGKPMEGWIAVTVSGLVTVSLLKPSGQVLTSTESLCRLRGRVALADIAFTGGGNIVVATADGSSASPVQFYKVCVSVVNEKCRIDTEILPSLFMRCTTDLNRRDRLPAITHLKFLARDMSEQVLLCASSQTSSVVECWSLRKEGLPVNNIFQQLSPAVGDKQPTILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVASDTQFYPGLGLALAFHDGSVHIVHRLSLQTMAIFYSSAAPRSVDEPAIKRPRATGPAVHFKAMQLSWTSLALVGIDNHGRLSMLRISPSMGHSLDAGLALRHLLFLLEYCMVTGYDWWDILLHVQPSMVQSLVEKLHEEYTRQKAELQQVLSTRILAMKASLCKLSPCAVTRVCEYHAKLFLIAASSTLKSLLRPHVLNTPDKSPGDRLTEICAKITDVDIDKVMINLKTEEFVLDMNTLQALQQLLQWVGDFVLYLLASLPNQGSPLRPGHSFLRDGTSLGMLRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSLLFRLLTKLWICCRDEGPTSEPDEALVDECCLLPSQLLIPSLDWLPVSDGLVSRLQPKQPLRLHFGKPPALPGSATSLQLDGLIRAPGQPKMDHLRRLHLGAYPTEACKACTRCGCVTMLKSPNKTTAVKQWEQRWIKNCLCGGLWWRMPLSYP |
Length | 790 |
Position | Tail |
Organism | Physeter macrocephalus (Sperm whale) (Physeter catodon) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia>
Eutheria> Laurasiatheria> Artiodactyla> Whippomorpha> Cetacea> Odontoceti>
Physeteridae> Physeter.
|
Aromaticity | 0.06 |
Grand average of hydropathy | -0.011 |
Instability index | 53.69 |
Isoelectric point | 8.88 |
Molecular weight | 86924.20 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP24487
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 79.91| 24| 34| 681| 712| 1
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681- 705 (42.50/38.71) LPVsDGLV.SRLQPKQP..LRLHFGKPP
714- 740 (37.42/15.45) LQL.DGLIrAPGQPKMDhlRRLHLGAYP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 90.05| 27| 35| 40| 73| 2
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40- 67 (48.28/21.47) RQDLNSSSRS..RGfCHVV..PPCSQGCDSQK
74- 104 (41.77/24.21) RQTPEGQARAggRG.CPELtpPPPPQSGASSF
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 70.57| 19| 37| 394| 414| 3
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394- 414 (31.47/25.24) GIDNHGRLsmLRISPSMGHSL
434- 452 (39.10/24.39) GYDWWDIL..LHVQPSMVQSL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 102.28| 30| 35| 587| 619| 4
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587- 619 (50.86/36.87) PLRPGHSFLRDGTSL..GMLRELMVVIRIWGllkP
623- 654 (51.42/30.10) PVYTATSDTQDSMSLlfRLLTKLWICCRDEG...P
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 109.08| 36| 55| 196| 235| 5
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196- 235 (54.30/43.93) SVVneKC.RIDTEILP..SLFMRCTTDLNrrDRLPAITHLKFL
253- 291 (54.79/32.16) SVV..ECwSLRKEGLPvnNIFQQLSPAVG..DKQPTILKWRIL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 101.57| 30| 36| 116| 145| 6
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116- 145 (51.41/32.81) SLTLFGGKPMEGWIAVTVSGLVTVSLLKPS
154- 183 (50.16/31.84) SLCRLRGRVALADIAFTGGGNIVVATADGS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 36.53| 12| 36| 486| 500| 7
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486- 500 (18.16/19.64) SPC.AVTRVCeyhAKL
524- 536 (18.37/ 9.17) SPGdRLTEIC...AKI
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 45.13| 14| 36| 340| 353| 8
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340- 353 (24.16/17.22) VHI.VHRLSLQTMAI
378- 392 (20.97/13.89) VHFkAMQLSWTSLAL
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