<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24476

Description Uncharacterized protein
SequenceGLQPDARARIVNKITETLKKHLPASAPDGVNELQKIAVRFEEKIYTAATNQSDYLRKISLKMLSMETKTQQAAGNAQVIPNQNNSTPGLPSEGSNQAQPSAIPLMSQQQARQPNTTSVQASSLTNIGQNLPGVNQTSTMQNVSVMPQNTMNNGLAQGTSQDIYAAQRQMAGRQQQQQSQQLIYQQQQMLMKQKLQQNSLMQPHIQQQQSLLQPTQMQSTQQSMMQMSSGLHPVQSTVPQTQPMSRQSVTQSGIQQNQLNSVQQSVPSLLQQPQQSVGRQQQQQAQPSMHQQPSLQRQQPNIPLQQQQQQQLMGQQPNLERNQLIGQQNGAVEMQQQQRLPAQSNNLLNVQQTQQQMLNQQSMPLHQPQQLGSQANMSSLQQQQQNQQQQRMHMLQMKAQQTQQQQHAQQPPMGLMQPQSQHNQLQQSQQHLMSQFQSQPNQLQQQLGMQQQSSMQQRLQTSGGMLLQQNNMDQQKQFIQAQRGLQEVSSSTSADSTTQTGLAGAGDWQEEIYQMIKSLKDQYFAELSDLSNKISMKLQHVDSIIPPQKPSEQYDRMKNFKNMLDRILQLLQISKSTIQPAMRDKVPQYEKQIISILNSQRRKPVQPQIQQQFQPPAGQAPNSSILQQQQTSQNLQQHDSHTNPQASLSSMSTGLQSSGVAGMQHVPVPPTTNFSAPTQQNGANIQHQPVSNLEAAQGGNFNSLQHGSVSGALQQGNTGPMQGTVNTQPQTSSGMLSHNSMSTMQPNGNSMQANASSLQQLKQQQQDHHMMQSQQMKRQMFQQYQQKQQMLQQQFPIQQQLQKQQQVQMQVPQLHAGNDVNESKARQGTAVKPGVYQQHLGQRSNYYHQQLKQGGAFPISSPQNLQASSPQISHHSPQVDQHNLLPSQVKTGTPLNSANSPYVPSPSPSVAPSPIPVDSDKPHSNISSLTNTGQTGHQQTSLAPQTQSIAVNTPGISASPLLAEFTSVDGSQANMPTQVPTKSDAAERPMDRLLKALRTTQRESLNAAVSDIRSVVSMMDRIAGSAPGNGSRTAVGEDLVAMTKCRLQARNFITNDGSGASKKMKRDISAMPLNVSSAGSVDDSFKQTFSVDTPDLQSTATSRAKRRKIEVNHALLEEIEEINQGLIDTELRVCEDDDESLIATSEGTVIKCTYTAVAVSPSLKSMLASAHTSPIMPLRLLVPAGYPKCSPVLLDKFLDEQRSVATLLIH
Length1209
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.03
Grand average of hydropathy-0.810
Instability index71.91
Isoelectric point9.44
Molecular weight133607.14
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24476
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     182.92|      38|      39|     844|     881|       4
---------------------------------------------------------------------------
  608-  640 (47.53/ 8.57)	IQQQFQPPA....GQA.PNSSILQQQ..QTSQNLQQHDSH
  703-  741 (41.48/ 6.46)	L.QHGSVSGALQQGNTGPMQGTVNTQpqTSSGMLSHNSMS
  842-  877 (53.46/10.64)	..RSNYYHQQLKQGGAFPISSPQNLQ..ASSPQISHHSPQ
  878-  908 (40.46/ 6.11)	VDQHNLLPSQVKTGT..PLNS.......ANSPYVPSPSPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     125.96|      28|      28|     333|     360|       5
---------------------------------------------------------------------------
  297-  341 (39.58/ 7.51)	QQPNIPLQQQQQQQLMGQQpnlernqligqqngaveMQQQQRLPA
  342-  372 (42.06/ 8.46)	QSNNLLNVQQTQQQMLNQQ..............smpLHQPQQLGS
  765-  791 (44.32/ 9.33)	QDHHMMQSQQMKRQMF.QQ.................YQQKQQMLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     111.06|      18|      20|     650|     667|       7
---------------------------------------------------------------------------
   65-   81 (23.66/ 6.72)	METKTQQAA.GNAQVIPN
  145-  162 (25.06/ 7.66)	MPQNTMNNGLAQGTSQDI
  650-  667 (31.12/11.75)	MSTGLQSSGVAGMQHVPV
  673-  689 (31.22/11.82)	FSAPTQQNG.ANIQHQPV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.85|      23|     121|     928|     968|      12
---------------------------------------------------------------------------
  467-  489 (40.67/ 9.52)	QQNNMDQQKQFIQAQR.G......LQEVSS
  937-  966 (27.18/38.19)	QQTSLAPQTQSIAVNTpGisasplLAEFTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.21|      15|      28|    1027|    1041|      13
---------------------------------------------------------------------------
 1027- 1041 (25.51/18.85)	GNGSRTAVGEDLVAM
 1056- 1070 (25.70/19.04)	GSGASKKMKRDISAM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.91|      13|      28|      82|     107|      14
---------------------------------------------------------------------------
   82-   97 (18.74/ 6.35)	QNNSTPglpSEGSNQA
  108-  120 (22.17/17.87)	QQARQP...NTTSVQA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.31|      25|      28|     552|     579|      16
---------------------------------------------------------------------------
  552-  579 (36.28/25.31)	QYDRMKNFKNmldRILQLLQIS.KSTIQP
  581-  606 (38.03/18.95)	MRDKVPQYEK...QIISILNSQrRKPVQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.88|      14|      39|     396|     409|      18
---------------------------------------------------------------------------
  396-  409 (25.64/10.29)	MKAQQTQQQQHAQQ
  432-  445 (26.24/10.77)	MSQFQSQPNQLQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.62|      11|      15|     234|     244|      19
---------------------------------------------------------------------------
  234-  244 (20.95/ 8.72)	QSTVPQTQPMS
  250-  260 (19.67/ 7.68)	QSGIQQNQLNS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24476 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NSVQQSVPSLLQQPQQSVGRQQQQQAQPSMHQQPSLQRQQPNIPLQQQQQQQLMGQQPNLERNQLIGQQNGAVEMQQQQRLPAQSNNLLNVQQTQQQMLNQQSMPLHQPQQLGSQANMSSLQQQQQNQQQQRMHMLQMKAQQTQQQQHAQQPPMGLMQPQSQHNQLQQSQQHLMSQFQSQPNQLQQQLGMQQQSSMQQRLQTSGGMLLQQNNMDQQKQFIQAQRGLQEVSSSTSADSTTQTGLAG
2) PDARARIVNKITETLKKHLPASAPDGVNEL
3) PLLAEFTSVDGSQANMPTQVPTKSDAAERPMDRLLKALRTTQR
4) PVQPQIQQQFQPPAGQAPNSSILQQQQTSQNLQQHDSHTNPQASLSSMSTGLQSSGVAGMQHVPVPPTTNFSAPTQQNGANIQHQPVSNLEAAQGGNFNSLQHGSVSGALQQGNTGPMQGTVNTQPQTSSGMLSHNSMSTMQPNGNSMQANASSLQQLKQQQQDHHMMQSQQMKRQMFQQYQQKQQ
5) QKLQQNSLMQPHIQQQQSLLQPTQMQSTQQSMMQMSSGLHPVQSTVPQTQPMSRQSVTQSGIQQNQ
6) QQQFPIQQQLQKQQQVQMQVPQLHAGNDVNESKARQGTAVKPGVYQQHLGQRSNYYHQQLKQGGAFPISSPQNLQASSPQISHHSPQVDQHNLLPSQVKTGTPLNSANSPYVPSPSPSVAPSPIPVDSDKPHSNISSLTNTGQTGHQQTSLAPQTQSIAVNTPGI
7) TQQAAGNAQVIPNQNNSTPGLPSEGSNQAQPSAIPLMSQQQARQPNTTSVQASSLTNIGQNLPGVNQTSTMQNVSVMPQNTMNNGLAQGTSQDIYAAQRQMAG
259
4
959
603
192
791
69
503
33
1001
788
257
955
171










Molecular Recognition Features






MoRF SequenceStartStop




NANANA