<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24475

Description Uncharacterized protein
SequenceMYGTFSETAPGLPSEGSNQAQPSAIPLMSQQQARQPNTTSVQASSLTNIGQNLPGVNQTSTMQNVSVMPQNTMNNGLAQGTSQDIYAAQRQMAGRQQQQQSQQLIYQQQQMLMKQKLQQNSLMQPHIQQQQSLLQPTQMQSTQQSMMQMSSGLHPVQSTVPQTQPMSRQSVTQSGIQQNQLNSVQQSVPSLLQQPQQSVGRQQQQQAQPSMHQQPSLQRQQPNIPLQQQQQQQLMGQQPNLERNQLIGQQNGAVEMQQQQRLPAQSNNLLNVQQTQQQMLNQQSMPLHQPQQLGSQANMSSLQQQQQNQQQQRMHMLQMKAQQTQQQQHAQQPPMGLMQPQSQHNQLQQSQQHLMSQFQSQPNQLQQQLGMQQQSSMQQRLQTSGGMLLQQNNMDQQKQFIQAQRGLQEVSSSTSADSTTQTGLAGAGDWQEEIYQMIKSLKDQYFAELSDLSNKISMKLQHVDSIIPPQKPSEQYDRMKNFKNMLDRILQLLQISKSTIQPAMRDKVPQYEKQIISILNSQRRKPVQPQIQQQFQPPAGQAPNSSILQQQQTSQNLQQHDSHTNPQASLSSMSTGLQSSGVAGMQHVPVPPTTNFSAPTQQNGANIQHQPVSNLEAAQGGNFNSLQHGSVSGALQQGNTGPMQGTVNTQPQTSSGMLSHNSMSTMQPNGNSMQANASSLQQLKQQQQDHHMMQSQQMKRQMFQQYQQKQQMLQQQFPIQQQLQKQQQVQMQVPQLHAGNDVNESKARQGTAVKPGVYQQHLGQRSNYYHQQLKQGGAFPISSPQNLQASSPQISHHSPQVDQHNLLPSQVKTGTPLNSANSPYVPSPSPSVAPSPIPVDSDKPHSNISSLTNTGQTGHQQTSLAPQTQSIAVNTPGISASPLLAEFTSVDGSQANMPTQVPTKSDAAERPMDRLLKALRTTQRESLNAAVSDIRSVVSMMDRIAGSAPGNGSRTAVGEDLVAMTKCRLQARNFITNDGSGASKKMKRDISAMPLNVSSAGSVDDSFKQTFSVDTPDLQSTATSRAKRRKIEVNHALLEEIEEINQGLIDTELRVCEDDDESLIATSEGTVIKCTYTAVAVSPSLKSMLASAHTSPIMPLRLLVPAGYPKCSPVLLDKFLDEQRNSDDLSSQAKSKFGVLLRGLDEPMSLREIARTWDACARGAIAEYAQKSGGGSFSSSYGRWETCVV
Length1189
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.03
Grand average of hydropathy-0.812
Instability index73.83
Isoelectric point9.18
Molecular weight131269.21
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24475
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.90|      20|      22|      89|     109|       3
---------------------------------------------------------------------------
   89-  109 (34.29/ 9.43)	QRQMAG.rQQQQQSQQLIYQQQ
  218-  239 (31.60/ 6.06)	QRQQPNipLQQQQQQQLMGQQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     656.07|      87|      87|     500|     586|       5
---------------------------------------------------------------------------
   19-  139 (71.11/14.62)	QAQPSA.................IplMSQQQA........RQ....P....................NT........T.SVQAsS...LT..NIGQNLP..GvNQ.......TSTMQ..........................nvsVM...PqnT.M...............................N...........NGLAQ.......................GTSQ..DIYAAqrqmagrqqqqqsqqliyqqqqmlmkqklQQNS......LMQPHIQ......Q....QqslLQP....T...QM
  140-  264 (48.28/ 7.19)	QSTQQS.................M..MQ...MSSG..L..HP....V....................QS....tvpQT.QP.......MS..R.....Q..S.VT.......QSGIQqnqlnsvqqsvpsllqqpqqsvgrqqqqqAQ...P..S.MhqqpslqrqqpniplqqqqqqqlmgqqpnleR...........N..............................QLIG.................................QQNG......AVE..MQ......Q....Q...QRL....P...A.
  265-  330 (68.95/13.92)	QSNN...................L..LNVQQTQQQ..MlnQQsmplH....................QP.......QQlGSQA.N...MS..SLQ............................................................................................................QQ.......................QQNQ.....QQ.............................QRMH......MLQMKAQ......Q....T...QQQ....Q...HA
  331-  464 (62.44/11.80)	QQPPMGlmqpqsqhnqlqqsqqhL..MSQFQSQPN..Q..LQ....Q....................QL.......GM.QQQ.......S..SMQQRLQ..T.SG.......GMLLQ...................qnnmdqqkqfIQ......A.Q...............................RglqevssstsaDSTTQ...............tglagagdWQEEIYQMIKS.............................LKDQyfaelsDLSNKIS......M....K...LQH....V...D.
  465-  540 (91.03/21.11)	.....S.................I..IPPQKPSE.......Q....Y....................DR.......MK.NFKN.M...LD..RILQLLQisK.ST.......I.....................................qP..A.M...............................R...........DKVPQ.......................YEKQIISILNS.............................QRRK......PVQPQIQ......Q....Q...FQP....P...AG
  541-  618 (109.32/27.06)	QAPNSS.................I..LQQQQTSQN..L..QQ....H....................DS.......HT.NPQA.S...LS..SMSTGLQ..S.SG.......VAGMQ..........................hvpVP...P..T.T...............................N...........FSAPT.........................Q.....................................QNGA......NI................Q...HQPvsnlE...AA
  619-  739 (65.53/12.81)	QGGNFN.................S..LQHGSVSGA..L..QQ....G....................NTgpmqgtvNT.QPQT.SsgmLShnSMST.MQ..P.NG........NSMQ........................anassL........................................................QQlkqqqqdhhmmqsqqmkrqmfqqY.QQKQQML...............................QQQF......PIQQQLQ......KqqqvQ...MQV....PqlhAG
  740-  841 (68.04/13.62)	NDVNES.................K..ARQGTAVKPgvY..QQ....HlgqrsnyyhqqlkqggafpiSS.......PQ.NLQA.S...SP..QISH..H..S.PQ.......VD..Q...........................hnLL...P..SqV...............................K...........TGTP.............................LNSANS.............................PYVP......SPSPSVA......P....S...PIP....V...DS
  842-  946 (71.38/14.71)	DKPHSN.................I..SSLTNTGQT..G..HQ....Q....................TS........L.APQTqS...IA..VNTPGIS..A.SPllaeftsVDGSQ...........................anMPtqvP..T.K...............................S...........DAAER.......................PMDRLLKALRT.............................TQRE......SLNAAVSdirsvvS....M...MDR....I...AG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24475 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MYGTFSETAPGLPSEGSNQAQPSAIPLMSQQQARQPNTTSVQASSLTNIGQNLPGVNQTSTMQNVSVMPQNTMNNGLAQGTSQDIYAAQRQMAG
2) NSVQQSVPSLLQQPQQSVGRQQQQQAQPSMHQQPSLQRQQPNIPLQQQQQQQLMGQQPNLERNQLIGQQNGAVEMQQQQRLPAQSNNLLNVQQTQQQMLNQQSMPLHQPQQLGSQANMSSLQQQQQNQQQQRMHMLQMKAQQTQQQQHAQQPPMGLMQPQSQHNQLQQSQQHLMSQFQSQPNQLQQQLGMQQQSSMQQRLQTSGGMLLQQNNMDQQKQFIQAQRGLQEVSSSTSADSTTQTGLAG
3) PLLAEFTSVDGSQANMPTQVPTKSDAAERPMDRLLKALRTTQR
4) PVQPQIQQQFQPPAGQAPNSSILQQQQTSQNLQQHDSHTNPQASLSSMSTGLQSSGVAGMQHVPVPPTTNFSAPTQQNGANIQHQPVSNLEAAQGGNFNSLQHGSVSGALQQGNTGPMQGTVNTQPQTSSGMLSHNSMSTMQPNGNSMQANASSLQQLKQQQQDHHMMQSQQMKRQMFQQYQQKQQ
5) QKLQQNSLMQPHIQQQQSLLQPTQMQSTQQSMMQMSSGLHPVQSTVPQTQPMSRQSVTQSGIQQNQ
6) QQQFPIQQQLQKQQQVQMQVPQLHAGNDVNESKARQGTAVKPGVYQQHLGQRSNYYHQQLKQGGAFPISSPQNLQASSPQISHHSPQVDQHNLLPSQVKTGTPLNSANSPYVPSPSPSVAPSPIPVDSDKPHSNISSLTNTGQTGHQQTSLAPQTQSIAVNTPGI
1
182
882
526
115
714
94
426
924
711
180
878










Molecular Recognition Features






MoRF SequenceStartStop




NANANA