<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24474

Description Uncharacterized protein
SequenceLQPDARARIVNKITETLKKHLPASAPDGVNELQKIAVRFEEKIYTAATNQSDYLRKISLKMLSMETKTQQAAGNAQVIPNQNNSTPGLPSEGSNQAQPSAIPLMSQQQARQPNTTSVQASSLTNIGQNLPGVNQTSTMQNVSVMPQNTMNNGLAQGTSQDIYAAQRQMAGRQQQQQSQQLIYQQQQMLMKQKLQQNSLMQPHIQQQQSLLQPTQMQSTQQSMMQMSSGLHPVQSTVPQTQPMSRQSVTQSGIQQNQLNSVQQSVPSLLQQPQQSVGRQQQQQAQPSMHQQPSLQRQQPNIPLQQQQQQQLMGQQPNLERNQLIGQQNGAVEMQQQQRLPAQSNNLLNVQQTQQQMLNQQSMPLHQPQQLGSQANMSSLQQQQQNQQQQRMHMLQMKAQQTQQQQHAQQPPMGLMQPQSQHNQLQQSQQHLMSQFQSQPNQLQQQLGMQQQSSMQQRLQTSGGMLLQQNNMDQQKQFIQAQRGLQEVSSSTSADSTTQTGLAGAGDWQEEIYQMIKSLKDQYFAELSDLSNKISMKLQHVDSIIPPQKPSEQYDRMKNFKNMLDRILQLLQISKSTIQPAMRDKVPQYEKQIISILNSQRRKPVQPQIQQQFQPPAGQAPNSSILQQQQTSQNLQQHDSHTNPQASLSSMSTGLQSSGVAGMQHVPVPPTTNFSAPTQQNGANIQHQPVSNLEAAQGGNFNSLQHGSVSGALQQGNTGPMQGTVNTQPQTSSGMLSHNSMSTMQPNGNSMQANASSLQQLKQQQQDHHMMQSQQMKRQMFQQYQQKQQMLQQQFPIQQQLQKQQQVQMQVPQLHAGNDVNESKARQGTAVKPGVYQQHLGQRSNYYHQQLKQGGAFPISSPQNLQASSPQISHHSPQVDQHNLLPSQVKTGTPLNSANSPYVPSPSPSVAPSPIPVDSDKPHSNISSLTNTGQTGHQQTSLAPQTQSIAVNTPGISASPLLAEFTSVDGSQANMPTQVPTKSDAAERPMDRLLKALRTTQRESLNAAVSDIRSVVSMMDRIAGSAPGNGSRTAVGEDLVAMTKCRLQARNFITNDGSGASKKMKRDISAMPLNVSSAGSVDDSFKQTFSVDTPDLQSTATSRAKRRKIEVNHALLEEIEEINQGLIDTELRVCEDDDESLIATSEGTVIKCTYTAVAVSPSLKSMLASAHTVSF
Length1173
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.03
Grand average of hydropathy-0.843
Instability index71.43
Isoelectric point9.46
Molecular weight129669.43
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24474
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            12|     873.66|      75|      75|     303|     377|       1
---------------------------------------------------------------------------
   64-  116 (65.28/11.61)	MET..KTQQAAG............N.AQVIP....NQNNS.TP........GL..PS.EG.SN......QA..Q........................PS.............................AIP.L.................M......SQQQAR...QPN.TTS
  117-  170 (54.46/ 8.21)	VQA..SSLTNIGQ...N...lPGV..NQTST....MQNVS.V..........M..PQ.NTmNN..G..L.A..Q........................GTS...QDIY..................................................A....A...QRQ.MAG
  173-  235 (84.50/17.66)	QQQ..QSQQLIYQ...Q....QQMLMKQKL.....QQNSL.MQphI.QQQQSLlqPT.Q......M.......Q........................STQ...QSMM................QM...SSG.LH.......................PVQ...........ST
  239-  301 (83.10/17.22)	TQP..MSRQSVT....Q....SGIQQNQLNS....VQQSV.PS..L.LQQ.....PQ.QS........VGR..Q........................Q.Q...QQ.................AQP...SM...H................Q......QPSLQR...QQP.NIP
  303-  377 (140.07/35.12)	QQQ..QQQQLMGQ...Q....PNLERNQLIG....QQNGA.VE..M.QQQQRL..PA.QS.NN..L..LNV..Q........................QTQ...QQML...............NQQ...SMP.LH................Q......PQQLGS...QAN.MSS
  379-  421 (55.05/ 8.40)	QQQ..QQ.......................................nQQQQRM.........H..M..LQMkaQ........................QTQ...QQQH...............AQQ..pPMG.LM................Q......PQ...S...QHN....
  423-  472 (59.53/ 9.81)	LQQ..SQQHLMSQfqsQ....P....NQL..................QQQ..................LGM..Q........................Q.QssmQQRL...............QTS...GGM.LL................Q...............QNN.MDQ
  473-  557 (50.51/ 6.97)	Q......KQFIQA...Q....RGL...QEVS....SSTSA..D..S.TTQTGL..AG.AG.D........W..Q........................EEI...YQMIkslkdqyfaelsdlsNKI...SMK.LQ................HvdsiipPQKPSE...QYDrMKN
  573-  648 (70.67/13.31)	KST..IQPAMRDK...V....PQYEK.QIISilnsQRRKP.VQpqI.QQQFQP..PAgQA.PNssI..LQQ..Q........................QTS...QNL.................QQ........H................D......SHT.NP...QAS.LSS
  649-  755 (65.12/11.56)	MSTglQSSGVAGM...QhvpvPPTTNFSAPT....QQNGAnIQ..H.QPVSNL.eAA.QG.GN..F..NSL..QhgsvsgalqqgntgpmqgtvntqpQTS...SGML...............SHN...SMS.TM................Q......PNGNSM...QAN.ASS
  760-  822 (80.13/16.28)	KQQ..QQDHHMMQ...S....QQMKR.QMFQ....QYQQK.QQ..M.LQQQ.F..PI.Q..............Q........................QLQ...KQQQ...............VQM...QVPqLH................A..........GN...DVN.ESK
  830-  926 (65.25/11.60)	KPG..VYQQHLGQ...R....SNYYHQQL......KQGGA.FP..I.SSPQNL..QA.SS.PQ..IshHSP..Q........................VDQ...HNLL...............PSQvktGTP.LNsanspyvpspspsvapS......PIPVDSdkpHSN.ISS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      23.73|      11|      51|     897|     909|       2
---------------------------------------------------------------------------
  953-  964 (11.53/ 6.38)	GI.SaSPLLAEFT
  965-  976 (12.20/ 7.43)	SVdG.SQANMPTQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.69|      20|      20|      19|      38|       3
---------------------------------------------------------------------------
   19-   38 (31.47/23.16)	KHLPASAPDGVNELQKIAVR
   41-   60 (29.21/20.87)	EKIYTAATNQSDYLRKISLK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.14|      20|      42|    1017|    1036|       4
---------------------------------------------------------------------------
  988- 1009 (28.01/15.98)	MDRLlkALRTTQRESLNAAVSD
 1017- 1036 (35.13/21.94)	MDRI..AGSAPGNGSRTAVGED
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24474 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NSVQQSVPSLLQQPQQSVGRQQQQQAQPSMHQQPSLQRQQPNIPLQQQQQQQLMGQQPNLERNQLIGQQNGAVEMQQQQRLPAQSNNLLNVQQTQQQMLNQQSMPLHQPQQLGSQANMSSLQQQQQNQQQQRMHMLQMKAQQTQQQQHAQQPPMGLMQPQSQHNQLQQSQQHLMSQFQSQPNQLQQQLGMQQQSSMQQRLQTSGGMLLQQNNMDQQKQFIQAQRGLQEVSSSTSADSTTQTGLAG
2) PLLAEFTSVDGSQANMPTQVPTKSDAAERPMDRLLKALRTTQR
3) PVQPQIQQQFQPPAGQAPNSSILQQQQTSQNLQQHDSHTNPQASLSSMSTGLQSSGVAGMQHVPVPPTTNFSAPTQQNGANIQHQPVSNLEAAQGGNFNSLQHGSVSGALQQGNTGPMQGTVNTQPQTSSGMLSHNSMSTMQPNGNSMQANASSLQQLKQQQQDHHMMQSQQMKRQMFQQYQQKQQ
4) QKLQQNSLMQPHIQQQQSLLQPTQMQSTQQSMMQMSSGLHPVQSTVPQTQPMSRQSVTQSGIQQNQ
5) QQQFPIQQQLQKQQQVQMQVPQLHAGNDVNESKARQGTAVKPGVYQQHLGQRSNYYHQQLKQGGAFPISSPQNLQASSPQISHHSPQVDQHNLLPSQVKTGTPLNSANSPYVPSPSPSVAPSPIPVDSDKPHSNISSLTNTGQTGHQQTSLAPQTQSIAVNTPGI
6) TQQAAGNAQVIPNQNNSTPGLPSEGSNQAQPSAIPLMSQQQARQPNTTSVQASSLTNIGQNLPGVNQTSTMQNVSVMPQNTMNNGLAQGTSQDIYAAQRQMAG
258
958
602
191
790
68
502
1000
787
256
954
170










Molecular Recognition Features






MoRF SequenceStartStop




NANANA