<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24473

Description Uncharacterized protein
SequenceWRAGLQPDARARIVNKITETLKKHLPASAPDGVNELQKIAVRFEEKIYTAATNQSDYLRKISLKMLSMETKTQQAAGNAQVIPNQNNSTPGLPSEGSNQAQPSAIPLMSQQQARQPNTTSVQASSLTNIGQNLPGVNQTSTMQNVSVMPQNTMNNGLAQGTSQDIYAAQRQMAGRQQQQQSQQLIYQQQQMLMKQKLQQNSLMQPHIQQQQSLLQPTQMQSTQQSMMQMSSGLHPVQSTVPQTQPMSRQSVTQSGIQQNQLNSVQQSVPSLLQQPQQSVGRQQQQQAQPSMHQQPSLQRQQPNIPLQQQQQQQLMGQQPNLERNQLIGQQNGAVEMQQQQRLPAQSNNLLNVQQTQQQMLNQQSMPLHQPQQLGSQANMSSLQQQQQNQQQQRMHMLQMKAQQTQQQQHAQQPPMGLMQPQSQHNQLQQSQQHLMSQFQSQPNQLQQQLGMQQQSSMQQRLQTSGGMLLQQNNMDQQKQFIQAQRGLQEVSSSTSADSTTQTGLAGAGDWQEEIYQMIKSLKDQYFAELSDLSNKISMKLQHVDSIIPPQKPSEQYDRMKNFKNMLDRILQLLQISKSTIQPAMRDKVPQYEKQIISILNSQRRKPVQPQIQQQFQPPAGQAPNSSILQQQQTSQNLQQHDSHTNPQASLSSMSTGLQSSGVAGMQHVPVPPTTNFSAPTQQNGANIQHQPVSNLEAAQGGNFNSLQHGSVSGALQQGNTGPMQGTVNTQPQTSSGMLSHNSMSTMQPNGNSMQANASSLQQLKQQQQDHHMMQSQQMKRQMFQQYQQKQQMLQQQFPIQQQLQKQQQVQMQVPQLHAGNDVNESKARQGTAVKPGVYQQHLGQRSNYYHQQLKQGGAFPISSPQNLQASSPQISHHSPQVDQHNLLPSQVKTGTPLNSANSPYVPSPSPSVAPSPIPVDSDKPHSNISSLTNTGQTGHQQTSLAPQTQSIAVNTPGISASPLLAEFTSVDGSQANMPTQVPTKSDAAERPMDRLLKALRTTQRESLNAAVSDIRSVVSMMDRIAGSAPGNGSRTAVGEDLVAMTKCRLQARNFITNDGSGASKKMKRDISAMPLNVSSAGSVDDSFKQTFSVDTPDLQSTATSRAKRRKIEVNHALLEEIEEINQGLIDTELRVCEDDDESLIATSEGTVIKCTYTAVAVSPSLKSMLASAHTVSF
Length1177
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.03
Grand average of hydropathy-0.844
Instability index71.22
Isoelectric point9.50
Molecular weight130139.95
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24473
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            12|     873.17|      75|      75|     307|     381|       1
---------------------------------------------------------------------------
   68-  120 (65.39/13.00)	MET..KTQQAAG............N.AQVIP....NQNNS.TP........GL..PS.EG.SN......QA..Q........................PS.............................AIP.L.................M......SQQQAR...QPN.TTS
  121-  174 (54.50/ 9.15)	VQA..SSLTNIGQ...N...lPGV..NQTST....MQNVS.V..........M..PQ.NTmNN..G..L.A..Q........................GTS...QDIY..................................................A....A...QRQ.MAG
  177-  239 (84.37/19.72)	QQQ..QSQQLIYQ...Q....QQMLMKQKL.....QQNSL.MQphI.QQQQSLlqPT.Q......M.......Q........................STQ...QSMM................QM...SSG.LH.......................PVQ...........ST
  243-  305 (83.04/19.25)	TQP..MSRQSVT....Q....SGIQQNQLNS....VQQSV.PS..L.LQQ.....PQ.QS........VGR..Q........................Q.Q...QQ.................AQP...SM...H................Q......QPSLQR...QQP.NIP
  307-  381 (140.11/39.44)	QQQ..QQQQLMGQ...Q....PNLERNQLIG....QQNGA.VE..M.QQQQRL..PA.QS.NN..L..LNV..Q........................QTQ...QQML...............NQQ...SMP.LH................Q......PQQLGS...QAN.MSS
  383-  425 (55.05/ 9.35)	QQQ..QQ.......................................nQQQQRM.........H..M..LQMkaQ........................QTQ...QQQH...............AQQ..pPMG.LM................Q......PQ...S...QHN....
  427-  476 (59.39/10.88)	LQQ..SQQHLMSQfqsQ....P....NQL..................QQQ..................LGM..Q........................Q.QssmQQRL...............QTS...GGM.LL................Q...............QNN.MDQ
  477-  561 (50.36/ 7.69)	Q......KQFIQA...Q....RGL...QEVS....SSTSA..D..S.TTQTGL..AG.AG.D........W..Q........................EEI...YQMIkslkdqyfaelsdlsNKI...SMK.LQ................HvdsiipPQKPSE...QYDrMKN
  577-  652 (70.50/14.81)	KST..IQPAMRDK...V....PQYEK.QIISilnsQRRKP.VQpqI.QQQFQP..PAgQA.PNssI..LQQ..Q........................QTS...QNL.................QQ........H................D......SHT.NP...QAS.LSS
  653-  759 (65.18/12.93)	MSTglQSSGVAGM...QhvpvPPTTNFSAPT....QQNGAnIQ..H.QPVSNL.eAA.QG.GN..F..NSL..QhgsvsgalqqgntgpmqgtvntqpQTS...SGML...............SHN...SMS.TM................Q......PNGNSM...QAN.ASS
  764-  826 (79.99/18.17)	KQQ..QQDHHMMQ...S....QQMKR.QMFQ....QYQQK.QQ..M.LQQQ.F..PI.Q..............Q........................QLQ...KQQQ...............VQM...QVPqLH................A..........GN...DVN.ESK
  834-  930 (65.29/12.97)	KPG..VYQQHLGQ...R....SNYYHQQL......KQGGA.FP..I.SSPQNL..QA.SS.PQ..IshHSP..Q........................VDQ...HNLL...............PSQvktGTP.LNsanspyvpspspsvapS......PIPVDSdkpHSN.ISS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      23.73|      11|      51|     901|     913|       2
---------------------------------------------------------------------------
  957-  968 (11.53/ 6.53)	GI.SaSPLLAEFT
  969-  980 (12.20/ 7.58)	SVdG.SQANMPTQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.69|      20|      20|      23|      42|       3
---------------------------------------------------------------------------
   23-   42 (31.47/19.22)	KHLPASAPDGVNELQKIAVR
   45-   64 (29.21/17.32)	EKIYTAATNQSDYLRKISLK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.14|      20|      42|    1021|    1040|       4
---------------------------------------------------------------------------
  992- 1013 (28.01/16.18)	MDRLlkALRTTQRESLNAAVSD
 1021- 1040 (35.13/22.22)	MDRI..AGSAPGNGSRTAVGED
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24473 with Med15 domain of Kingdom Viridiplantae
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