<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24472

Description Uncharacterized protein
SequenceMSQQQARQPNTTSVQASSLTNIGQNLPGVNQTSTMQNVSVMPQNTMNNGLAQGTSQDIYAAQRQMAGRQQQQQSQQLIYQQQQMLMKQKLQQNSLMQPHIQQQQSLLQPTQMQSTQQSMMQMSSGLHPVQSTVPQTQPMSRQSVTQSGIQQNQLNSVQQSVPSLLQQPQQSVGRQQQQQAQPSMHQQPSLQRQQPNIPLQQQQQQQLMGQQPNLERNQLIGQQNGAVEMQQQQRLPAQSNNLLNVQQTQQQMLNQQSMPLHQPQQLGSQANMSSLQQQQQNQQQQRMHMLQMKAQQTQQQQHAQQPPMGLMQPQSQHNQLQQSQQHLMSQFQSQPNQLQQQLGMQQQSSMQQRLQTSGGMLLQQNNMDQQKQFIQAQRGLQEVSSSTSADSTTQTGLAGAGDWQEEIYQMIKSLKDQYFAELSDLSNKISMKLQHVDSIIPPQKPSEQYDRMKNFKNMLDRILQLLQISKSTIQPAMRDKVPQYEKQIISILNSQRRKPVQPQIQQQFQPPAGQAPNSSILQQQQTSQNLQQHDSHTNPQASLSSMSTGLQSSGVAGMQHVPVPPTTNFSAPTQQNGANIQHQPVSNLEAAQGGNFNSLQHGSVSGALQQGNTGPMQGTVNTQPQTSSGMLSHNSMSTMQPNGNSMQANASSLQQLKQQQQDHHMMQSQQMKRQMFQQYQQKQQMLQQQFPIQQQLQKQQQVQMQVPQLHAGNDVNESKARQGTAVKPGVYQQHLGQRSNYYHQQLKQGGAFPISSPQNLQASSPQISHHSPQVDQHNLLPSQVKTGTPLNSANSPYVPSPSPSVAPSPIPVDSDKPHSNISSLTNTGQTGHQQTSLAPQTQSIAVNTPGISASPLLAEFTSVDGSQANMPTQVPTKSDAAERPMDRLLKALRTTQRESLNAAVSDIRSVVSMMDRIAGSAPGNGSRTAVGEDLVAMTKCRLQARNFITNDGSGASKKMKRDISAMPLNVSSAGSVDDSFKQTFSVDTPDLQSTATSRAKRRKIEVNHALLEEIEEINQGLIDTELRVCEDDDESLIATSEGTVIKCTYTAVAVSPSLKSMLASAHTSPIMPLRLLVPAGYPKCSPVLLDKFLDEQRNSDDLSSQAKSKFGVLLRGLDEPMSLREIARTWDACARGAIAEYAQKSGGGSFSSSYGRWETCVV
Length1162
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.03
Grand average of hydropathy-0.823
Instability index74.08
Isoelectric point9.29
Molecular weight128536.24
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24472
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     358.20|      39|      39|     262|     300|       1
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    8-   48 (36.54/ 6.29)	QPNTT.SVQA..SSLTNIGQNlpgvNQ....T...STMQ.NV...SVMPQNTMN.....N
   54-   96 (38.63/ 7.25)	TSQDIyAAQRQMAGRQQQQQS....QQliyqQ...QQML.MK...Q.KLQQNSL.....M
  167-  200 (36.43/ 6.24)	QPQQ.........SVGRQQQQ....QA....Q...PSMH......QQPSLQRQQpniplQ
  262-  300 (77.83/25.34)	QPQQL.GSQANMSSLQQQQQN....QQ....Q...QRMH.ML...QMKAQQTQQ.....Q
  312-  339 (42.14/ 8.87)	QPQ....SQHN.....QLQQS....QQ...........HlMS...QFQSQPNQL.....Q
  340-  377 (37.51/ 6.74)	..QQL.GMQQQ.SSMQQRLQT....SG....GmllQQNN.MD...QQK.QFIQA.....Q
  640-  679 (52.84/13.81)	QPNGN.SMQANASSLQQLK......QQ....Q...QDHH.MMqsqQMKRQMFQQ.....Y
  681-  711 (36.28/ 6.17)	QKQQM.LQQQ..FPIQQQLQK....QQ....Q...VQMQ.VP...QLHA...........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.29|      15|      16|     580|     595|       2
---------------------------------------------------------------------------
   97-  111 (27.80/ 9.56)	QPH...IQQQQ.SLLQPTQ
  574-  592 (18.49/ 7.04)	QQNganIQHQPvSNLEAAQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     130.18|      29|      87|     518|     548|       4
---------------------------------------------------------------------------
  440-  462 (28.68/ 8.16)	IPPQKPS....EQYDRMKNFKNM......LD.....rI
  463-  500 (25.65/11.69)	LQLLQISKStIQPAMRDKVPQYEkqiisiLNSQRRkpV
  501-  520 (28.58/ 8.10)	..QPQIQQQ.FQP....PAGQAP......NSS.....I
  521-  548 (47.27/18.80)	LQQQQTSQN.LQQHDSHTNPQAS......LSSMST...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.49|      21|     214|     601|     628|       5
---------------------------------------------------------------------------
  129-  156 (18.17/11.19)	VQSTV.PQTQP..............msRQSVtqSGiqQNQLnS
  833-  871 (17.32/ 8.70)	QQTSLaPQTQSiavntpgisaspllaeFTSV..DG.sQANM.P
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.62|      14|     214|     601|     614|       6
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  601-  614 (26.64/13.93)	HGSVSGALQQGNTG
  818-  831 (23.98/11.76)	HSNISSLTNTGQTG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.90|      13|      51|     794|     806|       7
---------------------------------------------------------------------------
  763-  775 (24.13/10.31)	SSPQISHHSPQVD
  794-  806 (24.77/10.80)	NSPYVPSPSPSVA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.21|      15|      26|     923|     937|       9
---------------------------------------------------------------------------
  923-  937 (25.51/19.62)	GNGSRTAVGEDLVAM
  952-  966 (25.70/19.82)	GSGASKKMKRDISAM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.89|      22|      26|     712|     735|      10
---------------------------------------------------------------------------
  712-  734 (33.92/14.64)	GNDVN..ESKARQGTAVkPGVYQQH
  736-  759 (35.97/15.88)	GQRSNyyHQQLKQGGAF.PISSPQN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.50|      15|     132|     113|     127|      18
---------------------------------------------------------------------------
  113-  127 (29.62/11.80)	QSTQQSMM.QMSSGLH
  246-  261 (25.88/ 9.20)	QQTQQQMLnQQSMPLH
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24472 with Med15 domain of Kingdom Viridiplantae
Unable to open file!